DM-RPIs: Predicting ncRNA-protein interactions using stacked ensembling strategy. - Shuping Cheng; Lu Zhang; Jianjun Tan; Weikang Gong; Chunhua Li 001; Xiaoyi Zhang (Comput. Biol. Chem., 2019)

Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification. - Zhen Yang; Xueqing Deng; Yang Liu; Weikang Gong; Chunhua Li 001 (BMC Bioinform., 2020)

aPRBind: protein-RNA interface prediction by combining sequence and I-TASSER model-based structural features learned with convolutional neural networks. - Yang Liu; Weikang Gong; Yanpeng Zhao; Xueqing Deng; Shan Zhang; Chunhua Li 001 (Bioinform., 2021)

Equally Weighted Multiscale Elastic Network Model and Its Comparison with Traditional and Parameter-Free Models. - Weikang Gong; Yang Liu; Yanpeng Zhao; Shihao Wang; Zhongjie Han; Chunhua Li 001 (J. Chem. Inf. Model., 2021)

Persistent spectral simplicial complex-based machine learning for chromosomal structural analysis in cellular differentiation. - Weikang Gong; Junjie Wee; Min-Chun Wu; Xiaohan Sun; Chunhua Li 001; Kelin Xia (Briefings Bioinform., 2022)

An ensemble approach to predict binding hotspots in protein-RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies. - Tong Zhou 013; Jie Rong; Yang Liu; Weikang Gong; Chunhua Li 001 (Bioinform., 2022)

Key Residues in δ Opioid Receptor Allostery Explored by the Elastic Network Model and the Complex Network Model Combined with the Perturbation Method. - Lei Chen; Weikang Gong; Zhongjie Han; Wenxue Zhou; Shuang Yang; Chunhua Li 001 (J. Chem. Inf. Model., 2022)

Identification of metal ion-binding sites in RNA structures using deep learning method. - Yanpeng Zhao; Jingjing Wang; Fubin Chang; Weikang Gong; Yang Liu; Chunhua Li 001 (Briefings Bioinform., 2023)

emPDBA: protein-DNA binding affinity prediction by combining features from binding partners and interface learned with ensemble regression model. - Shuang Yang; Weikang Gong; Tong Zhou 013; Xiaohan Sun; Lei Chen; Wenxue Zhou; Chunhua Li 001 (Briefings Bioinform., 2023)

Dynamic Insights into the Self-Activation Pathway and Allosteric Regulation of the Orphan G-Protein-Coupled Receptor GPR52. - Zhixiang Wu; Zhongjie Han; Lianci Tao; Xiaohan Sun; Jingjie Su; Jianping Hu; Chunhua Li 001 (J. Chem. Inf. Model., 2023)

RNAfcg: RNA Flexibility Prediction Based on Topological Centrality and Global Features. - Fubin Chang; Lamei Liu; Fangrui Hu; Xiaohan Sun; Yingchun Zhao; Na Zhang; Chunhua Li 001 (J. Chem. Inf. Model., 2024)

Prediction of Protein Allosteric Sites with Transfer Entropy and Spatial Neighbor-Based Evolutionary Information Learned by an Ensemble Model. - Fangrui Hu; Fubin Chang; Lianci Tao; Xiaohan Sun; Lamei Liu; Yingchun Zhao; Zhongjie Han; Chunhua Li 001 (J. Chem. Inf. Model., 2024)

ESPDHot: An Effective Machine Learning-Based Approach for Predicting Protein-DNA Interaction Hotspots. - Lianci Tao; Tong Zhou 013; Zhixiang Wu; Fangrui Hu; Shuang Yang; Xiaotian Kong; Chunhua Li 001 (J. Chem. Inf. Model., 2024)