Trans-species learning of cellular signaling systems with bimodal deep belief networks. - Lujia Chen 001; Chunhui Cai; Vicky Chen; Xinghua Lu 001 (Bioinform., 2015)

Learning a hierarchical representation of the yeast transcriptomic machinery using an autoencoder model. - Lujia Chen 001; Chunhui Cai; Vicky Chen; Xinghua Lu 001 (BMC Bioinform., 2016)

Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma. - Jonathan D. Young; Chunhui Cai; Xinghua Lu 001 (BMC Bioinform., 2017)

Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. - Chunhui Cai; Gregory F. Cooper; Kevin N. Lu; Xiaojun Ma; Shuping Xu; Zhenlong Zhao; Xueer Chen; Yifan Xue; Adrian V. Lee; Nathan Clark; Vicky Chen; Songjian Lu; et al. (PLoS Comput. Biol., 2019)

From Genome to Phenome: Predicting Multiple Cancer Phenotypes Based on Somatic GenomicAlterations via the Genomic Impact Transformer. - Yifeng Tao; Chunhui Cai; William W. Cohen; Xinghua Lu 001 (PSB, 2020)