miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules. - Junpeng Zhang 001; Lin Liu 003; Taosheng Xu; Yong Xie; Chunwen Zhao; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2019)

LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer. - Junpeng Zhang 001; Taosheng Xu; Lin Liu 003; Wu Zhang; Chunwen Zhao; Sijing Li; Jiuyong Li; Nini Rao; Thuc Duy Le (PLoS Comput. Biol., 2020)

Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data. - Junpeng Zhang 001; Lin Liu 003; Taosheng Xu; Wu Zhang; Chunwen Zhao; Sijing Li; Jiuyong Li; Nini Rao; Thuc Duy Le (BMC Bioinform., 2021)

Pan-cancer characterization of ncRNA synergistic competition uncovers potential carcinogenic biomarkers. - Junpeng Zhang 001; Lin Liu 003; Xuemei Wei; Chunwen Zhao; Sijing Li; Jiuyong Li; Thuc Duy Le (PLoS Comput. Biol., 2023)

Modelling cell type-specific lncRNA regulatory network in autism with Cycle. - Chenchen Xiong; Mingfang Zhang 005; Haolin Yang; Xuemei Wei; Chunwen Zhao; Junpeng Zhang 001 (BMC Bioinform., 2024)