Novel H/ACA Box snoRNA Mining and Secondary Structure Prediction Algorithms. - Quan Zou 001; Maozu Guo 001; Chunyu Wang 002; Yingpeng Han; Wenbin Li (RSKT, 2009)

CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data. - Jun Wang 035; Maozu Guo 001; Chunyu Wang 002 (BMC Bioinform., 2009)

A hybrid clustering and graph based algorithm for tagSNP selection. - Maozu Guo 001; Jun Wang 035; Chunyu Wang 002; Yang Liu 006 (Soft Comput., 2009)

A new distance computing method for DNA sequences in phylogenetic analysis. - Juan Wang 011; Maozu Guo 001; Kai Che; Chunyu Wang 002; Xiaoyan Liu; Yang Liu 006 (FSKD, 2013)

Effective constructing training sets for object detection. - Weining Wu; Yang Liu 006; Wei Zeng 006; Maozu Guo 001; Chunyu Wang 002; Xiaoyan Liu (ICIP, 2013)

Measuring gene functional similarity based on group-wise comparison of GO terms. - Zhixia Teng; Maozu Guo 001; Xiaoyan Liu; Qiguo Dai; Chunyu Wang 002; Ping Xuan (Bioinform., 2013)

Lnetwork: an efficient and effective method for constructing phylogenetic networks. - Juan Wang 011; Maozu Guo 001; Xiaoyan Liu; Yang Liu 006; Chunyu Wang 002; Linlin Xing; Kai Che (Bioinform., 2013)

A probabilistic model of active learning with multiple noisy oracles. - Weining Wu; Yang Liu 006; Maozu Guo 001; Chunyu Wang 002; Xiaoyan Liu (Neurocomputing, 2013)

Identification of functional miRNA regulatory modules and their associations via dynamic miRNA regulatory function. - Shuang Cheng; Maozu Guo 001; Chunyu Wang 002; Xiaoyan Liu; Yang Liu 006 (BIBM, 2014)

SoyFN: a knowledge database of soybean functional networks. - Yungang Xu; Maozu Guo 001; Xiaoyan Liu; Chunyu Wang 002; Yang Liu 006 (Database J. Biol. Databases Curation, 2014)

Inferring the soybean (Glycine max) microRNA functional network based on target gene network. - Yungang Xu; Maozu Guo 001; Xiaoyan Liu; Chunyu Wang 002; Yang Liu 006 (Bioinform., 2014)

CPL: Detecting Protein Complexes by Propagating Labels on Protein-Protein Interaction Network. - Qiguo Dai; Mao-Zu Guo 001; Xiao-Yan Liu; Zhixia Teng; Chunyu Wang 002 (J. Comput. Sci. Technol., 2014)

Non-negative Locality-Constrained Linear Coding for Image Classification. - GuoJun Liu; Yang Liu 006; Maozu Guo 001; Peina Liu; Chunyu Wang 002 (IScIDE (1), 2015)

Reconstructing gene regulatory network based on candidate auto selection method. - Linlin Xing; Maozu Guo 001; Xiaoyan Liu; Chunyu Wang 002; Lei Wang 085; Yin Zhang 009 (BIBM, 2016)

SGFSC: speeding the gene functional similarity calculation based on hash tables. - Zhen Tian; Chunyu Wang 002; Maozu Guo 001; Xiaoyan Liu; Zhixia Teng (BMC Bioinform., 2016)

An improved method for functional similarity analysis of genes based on Gene Ontology. - Zhen Tian; Chunyu Wang 002; Maozu Guo 001; Xiaoyan Liu; Zhixia Teng (BMC Syst. Biol., 2016)

MiRTDL: A Deep Learning Approach for miRNA Target Prediction. - Shuang Cheng; Maozu Guo 001; Chunyu Wang 002; Xiaoyan Liu; Yang Liu 006; Xuejian Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Constructing an integrated gene similarity network for the identification of disease genes. - Zhen Tian; Maozu Guo 001; Chunyu Wang 002; Linlin Xing; Lei Wang 085; Yin Zhang 009 (J. Biomed. Semant., 2017)

Refine gene functional similarity network based on interaction networks. - Zhen Tian; Maozu Guo 001; Chunyu Wang 002; Xiaoyan Liu; Shiming Wang (BMC Bioinform., 2017)

Identification and prioritization of differentially expressed genes for time-series gene expression data. - Linlin Xing; Maozu Guo 001; Xiaoyan Liu; Chunyu Wang 002 (Frontiers Comput. Sci., 2018)

OntoSem: an Ontology Semantic Representation Methodology for Biomedical Domain. - Lingling Zhao; Junjie Wang 005; Liang Cheng 006; Chunyu Wang 002 (BIBM, 2020)

Gene Ontology aided Compound Protein Binding Affinity Prediction Using BERT Encoding. - Lingling Zhao; Peijin Xie; Lingfeng Hao; Tiantian Li; Chunyu Wang 002 (BIBM, 2020)

Predicting Sub-Golgi Apparatus Resident Protein With Primary Sequence Hybrid Features. - Chunyu Wang 002; Jialin Li; Xiaoyan Liu; Maozu Guo 001 (IEEE Access, 2020)

Identification of Type VI Effector Proteins Using a Novel Ensemble Classifier. - Chunyu Wang 002; Jialin Li; Ying Zhang; Maozu Guo 001 (IEEE Access, 2020)

Data fusion-based algorithm for predicting miRNA-Disease associations. - Chunyu Wang 002; Kai Sun; Juexin Wang; Maozu Guo 001 (Comput. Biol. Chem., 2020)

SeqGO-CPA: Improving Compound-Protein Binding Affinity Prediction with Sequence Information and Gene Ontology Knowledge. - Chunyu Wang 002; Yan Zhu 006; Naifeng Wen; Lingling Zhao; Junjie Wang 005 (BIBM, 2021)

Pathogenic gene prediction based on network embedding. - Yang Liu 006; Yuchen Guo; Xiaoyan Liu; Chunyu Wang 002; Maozu Guo 001 (Briefings Bioinform., 2021)

Critical downstream analysis steps for single-cell RNA sequencing data. - Zilong Zhang; Feifei Cui; Chen Lin 001; Lingling Zhao; Chunyu Wang 002; Quan Zou 001 (Briefings Bioinform., 2021)

Learning representations for gene ontology terms by jointly encoding graph structure and textual node descriptors. - Lingling Zhao; Huiting Sun; Xinyi Cao; Naifeng Wen; Junjie Wang 005; Chunyu Wang 002 (Briefings Bioinform., 2022)

GMNN2CD: identification of circRNA-disease associations based on variational inference and graph Markov neural networks. - Mengting Niu; Quan Zou 001; Chunyu Wang 002 (Bioinform., 2022)

RGCNCDA: Relational graph convolutional network improves circRNA-disease association prediction by incorporating microRNAs. - Yaojia Chen; Yanpeng Wang; Yijie Ding; Xi Su; Chunyu Wang 002 (Comput. Biol. Medicine, 2022)

ELECTRA-DTA: a new compound-protein binding affinity prediction model based on the contextualized sequence encoding. - Junjie Wang 005; Naifeng Wen; Chunyu Wang 002; Lingling Zhao; Liang Cheng 006 (J. Cheminformatics, 2022)

Continuous Prompt for Chemical Language Model Aided Anticancer Synergistic Drug Combination Prediction. - Guannan Geng; Lingling Zhao; Chunyu Wang 002; Xiaoyan Liu; Junjie Wang 005 (IEEE Big Data, 2023)

Camera Invariant Feature Learning for Unsupervised Person Re-Identification. - Zhiqi Pang; Lingling Zhao; Qiuyang Liu; Chunyu Wang 002 (IEEE Trans. Multim., 2023)

Reliability modeling and contrastive learning for unsupervised person re-identification. - Zhiqi Pang; Chunyu Wang 002; Junjie Wang 005; Lingling Zhao (Knowl. Based Syst., 2023)

Using a stacked ensemble learning framework to predict modulators of protein-protein interactions. - Mengyao Gao; Lingling Zhao; Zitong Zhang; Junjie Wang 005; Chunyu Wang 002 (Comput. Biol. Medicine, 2023)

DataDTA: a multi-feature and dual-interaction aggregation framework for drug-target binding affinity prediction. - Yan Zhu 006; Lingling Zhao; Naifeng Wen; Junjie Wang 005; Chunyu Wang 002 (Bioinform., 2023)

DFFNDDS: prediction of synergistic drug combinations with dual feature fusion networks. - Mengdie Xu; Xinwei Zhao; Jingyu Wang; Wei Feng; Naifeng Wen; Chunyu Wang 002; Junjie Wang 005; Yun Liu; Lingling Zhao (J. Cheminformatics, 2023)

Multimodal Contrastive Learning for Protein-Protein Interaction Inhibitor Prediction. - Zitong Zhang; Zhixian Wang; Lingling Zhao; Junjie Wang 005; Chunyu Wang 002 (BIBM, 2024)

Dual-Resolution Fusion Modeling for Unsupervised Cross-Resolution Person Re-Identification. - Zhiqi Pang; Lingling Zhao; Chunyu Wang 002 (ACM Multimedia, 2024)

PPII-AEAT: Prediction of protein-protein interaction inhibitors based on autoencoders with adversarial training. - Zitong Zhang; Lingling Zhao; Mengyao Gao; Yuanlong Chen; Junjie Wang 005; Chunyu Wang 002 (Comput. Biol. Medicine, 2024)

MIMR: Modality-Invariance Modeling and Refinement for unsupervised visible-infrared person re-identification. - Zhiqi Pang; Chunyu Wang 002; Honghu Pan; Lingling Zhao; Junjie Wang 005; Maozu Guo 001 (Knowl. Based Syst., 2024)

Clothing-invariant contrastive learning for unsupervised person re-identification. - Zhiqi Pang; Lingling Zhao; Chunyu Wang 002 (Neural Networks, 2024)

Drug-Target Binding Affinity Prediction in a Continuous Latent Space Using Variational Autoencoders. - Lingling Zhao; Yan Zhu 006; Naifeng Wen; Chunyu Wang 002; Junjie Wang 005; Yongfeng Yuan (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

Identification, characterization and expression analysis of circRNA encoded by SARS-CoV-1 and SARS-CoV-2. - Mengting Niu; Chunyu Wang 002; Yaojia Chen; Quan Zou 001; Lei Xu (Briefings Bioinform., 2024)

AutoEdge-CCP: A novel approach for predicting cancer-associated circRNAs and drugs based on automated edge embedding. - Yaojia Chen; Jiacheng Wang 009; Chunyu Wang 002; Quan Zou 001 (PLoS Comput. Biol., 2024)

Cross-Modality Hierarchical Clustering and Refinement for Unsupervised Visible-Infrared Person Re-Identification. - Zhiqi Pang; Chunyu Wang 002; Lingling Zhao; Yang Liu 006; Gaurav Sharma 001 (IEEE Trans. Circuits Syst. Video Technol., 2024)

MAMLCDA: A Meta-Learning Model for Predicting circRNA-Disease Association Based on MAML Combined With CNN. - Yuanyi Tian; Quan Zou 001; Chunyu Wang 002; Cangzhi Jia (IEEE J. Biomed. Health Informatics, 2024)

A Hierarchical Graph Neural Network Framework for Predicting Protein-Protein Interaction Modulators With Functional Group Information and Hypergraph Structure. - Zitong Zhang; Lingling Zhao; Junjie Wang 005; Chunyu Wang 002 (IEEE J. Biomed. Health Informatics, 2024)

A MLP-Mixer and mixture of expert model for remaining useful life prediction of lithium-ion batteries. - Lingling Zhao; Shitao Song; Pengyan Wang; Chunyu Wang 002; Junjie Wang 005; Maozu Guo 001 (Frontiers Comput. Sci., 2024)

Inter-Modality Similarity Learning for Unsupervised Multi-Modality Person Re-Identification. - Zhiqi Pang; Lingling Zhao; Yang Liu 006; Gaurav Sharma 001; Chunyu Wang 002 (IEEE Trans. Circuits Syst. Video Technol., 2024)

Identity-Clothing Similarity Modeling for Unsupervised Clothing Change Person Re-Identification. - Zhiqi Pang; Junjie Wang 005; Lingling Zhao; Chunyu Wang 002 (CVPR, 2025)

Image-text semantic learning for unsupervised cross-resolution person re-identification. - Fuqi Liu; Zhiqi Pang; Chunyu Wang 002 (Expert Syst. Appl., 2025)

Improving protein-protein interaction modulator predictions via knowledge-fused language models. - Zitong Zhang; Quan Zou 001; Chunyu Wang 002; Junjie Wang 005; Lingling Zhao (Inf. Fusion, 2025)

Joint Augmentation and Part Learning for Unsupervised Clothing Change Person Re-Identification. - Zhiqi Pang; Lingling Zhao; Yang Liu 006; Gaurav Sharma 001; Chunyu Wang 002 (IEEE Trans. Inf. Forensics Secur., 2025)

Predicting circRNA-Drug Resistance Associations Based on a Multimodal Graph Representation Learning Framework. - Ziqiang Liu; Qiguo Dai; Xianhai Yu; Xiaodong Duan; Chunyu Wang 002 (IEEE J. Biomed. Health Informatics, 2025)

Computational approaches for circRNA-disease association prediction: a review. - Mengting Niu; Yaojia Chen; Chunyu Wang 002; Quan Zou 001; Lei Xu (Frontiers Comput. Sci., 2025)