Glocal alignment: finding rearrangements during alignment. - Michael Brudno; Sanket Malde; Alexander Poliakov; Chuong B. Do; Olivier Couronne; Inna Dubchak; Serafim Batzoglou (ISMB (Supplement of Bioinformatics), 2003)

PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences. - Chuong B. Do; Michael Brudno; Serafim Batzoglou (AAAI, 2004)

Transfer learning for text classification. - Chuong B. Do; Andrew Y. Ng (NIPS, 2005)

CONTRAfold: RNA secondary structure prediction without physics-based models. - Chuong B. Do; Daniel A. Woods; Serafim Batzoglou (ISMB (Supplement of Bioinformatics), 2006)

Training Conditional Random Fields for Maximum Labelwise Accuracy. - Samuel S. Gross; Olga Russakovsky; Chuong B. Do; Serafim Batzoglou (NIPS, 2006)

CONTRAlign: Discriminative Training for Protein Sequence Alignment. - Chuong B. Do; Samuel S. Gross; Serafim Batzoglou (RECOMB, 2006)

Efficient multiple hyperparameter learning for log-linear models. - Chuong B. Do; Chuan-Sheng Foo; Andrew Y. Ng (NIPS, 2007)

A max-margin model for efficient simultaneous alignment and folding of RNA sequences. - Chuong B. Do; Chuan-Sheng Foo; Serafim Batzoglou (ISMB, 2008)

Tighter Bounds for Structured Estimation. - Olivier Chapelle; Chuong B. Do; Quoc V. Le; Alexander J. Smola; Choon Hui Teo (NIPS, 2008)

Automatic Parameter Learning for Multiple Network Alignment. - Jason Flannick; Antal F. Novak; Chuong B. Do; Balaji S. Srinivasan; Serafim Batzoglou (RECOMB, 2008)

Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA. - Andreas Sundquist; Eugene Fratkin; Chuong B. Do; Serafim Batzoglou (RECOMB, 2008)

Proximal regularization for online and batch learning. - Chuong B. Do; Quoc V. Le; Chuan-Sheng Foo (ICML, 2009)

A majorization-minimization algorithm for (multiple) hyperparameter learning. - Chuan-Sheng Foo; Chuong B. Do; Andrew Y. Ng (ICML, 2009)

A Classifier-based approach to identify genetic similarities between diseases. - Marc A. Schaub; Irene M. Kaplow; Marina Sirota; Chuong B. Do; Atul J. Butte; Serafim Batzoglou (Bioinform., 2009)

Automatic Parameter Learning for Multiple Local Network Alignment. - Jason Flannick; Antal F. Novak; Chuong B. Do; Balaji S. Srinivasan; Serafim Batzoglou (J. Comput. Biol., 2009)

Discriminative structured models for biological sequence analysis. - Chuong B. Do (2009)

Tuned Models of Peer Assessment in MOOCs. - Chris Piech; Jonathan Huang; Zhenghao Chen; Chuong B. Do; Andrew Y. Ng; Daphne Koller (EDM, 2013)

Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans. - Sarah J. Aerni; Xiao Liu; Chuong B. Do; Samuel S. Gross; Andy Nguyen; Stephen D. Guo; Fuhui Long; Hanchuan Peng; Stuart S. Kim; Serafim Batzoglou (Bioinform., 2013)

MOOCdb: Developing Standards and Systems to Support MOOC Data Science. - Kalyan Veeramachaneni; Sherif A. Halawa; Franck Dernoncourt; Una-May O'Reilly; Colin Taylor; Chuong B. Do (CoRR, 2014)

Offering Verified Credentials in Massive Open Online Courses: MOOCs and technology to advance learning and learning research (Ubiquity symposium). - Andrew L. Maas; Chris Heather; Chuong B. Do; Relly Brandman; Daphne Koller; Andrew Y. Ng (Ubiquity, 2014)

Automated Generation of Learning Paths at Scale. - Julianna Zhuxin Jia; Gulsen Kutluoglu; Chuong B. Do (L@S, 2020)