PyCoTools: a Python toolbox for COPASI. - Ciaran M. Welsh; Nicola Fullard; Carole J. Proctor; Alvaro Martinez-Guimera; Robert J. Isfort; Charles C. Bascom; Ryan Tasseff; Stefan A. Przyborski; Daryl P. Shanley (Bioinform., 2018)

libOmexMeta: enabling semantic annotation of models to support FAIR principles. - Ciaran M. Welsh; David P. Nickerson; Anand K. Rampadarath; Maxwell Lewis Neal; Herbert M. Sauro; John H. Gennari (Bioinform., 2021)

libRoadRunner 2.0: a high performance SBML simulation and analysis library. - Ciaran M. Welsh; Jin Xu; Lucian P. Smith; Matthias König 003; Kiri Choi; Herbert M. Sauro (Bioinform., 2023)