Identification of a Dynamic Model for a Thin Film Deposition Process using a Self-Organizing Map. - Cihan Oguz; Martha A. Gallivan (IJCNN, 2006)

Identification and Evaluation of a Dynamic Model for a Thin Film Deposition Process. - Cihan Oguz; Martha A. Gallivan (ACC, 2007)

Optimization of a thin film deposition process using a dynamic model extracted from molecular simulations. - Cihan Oguz; Martha A. Gallivan (Autom., 2008)

Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model. - Cihan Oguz; Teeraphan Laomettachit; Katherine C. Chen; Layne T. Watson; William T. Baumann; John J. Tyson (BMC Syst. Biol., 2013)

Global parameter estimation for a eukaryotic cell cycle model in systems biology. - T. M. Andrew; Brandon D. Amos; David R. Easterling; Cihan Oguz; William T. Baumann; John J. Tyson; Layne T. Watson (SummerSim, 2014)

Predicting network modules of cell cycle regulators using relative protein abundance statistics. - Cihan Oguz; Layne T. Watson; William T. Baumann; John J. Tyson (BMC Syst. Biol., 2017)

Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle. - Minghan Chen; Brandon D. Amos; Layne T. Watson; John J. Tyson; Young Cao; Clifford A. Shaffer; Michael W. Trosset; Cihan Oguz; Gisella Kakoti (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes Using Short Read Data. - Michael Ford; Ananth Hari; Oscar Rodriguez; Junyan Xu; Justin Lack; Cihan Oguz; Yu Zhang; Sarah Weber; Mary Magliocco; Jason Barnett; Sandhya Xirasagar; Smilee Samuel; et al. (RECOMB, 2022)