Assembly of the Transmembrane Domain of E. coli PhoQ Histidine Kinase: Implications for Signal Transduction from Molecular Simulations. - Thomas Lemmin; Cinque S. Soto; Graham Clinthorne; William F. DeGrado; Matteo Dal Peraro (PLoS Comput. Biol., 2013)

Structure and immune recognition of trimeric pre-fusion HIV-1 Env. - Marie Pancera; Tongqing Zhou; Aliaksandr Druz; Ivelin S. Georgiev; Cinque S. Soto; Jason Gorman; Jinghe Huang; Priyamvada Acharya; Gwo-Yu Chuang; Gilad Ofek; Guillaume B. E. Stewart-Jones; Jonathan Stuckey; et al. (Nat., 2014)

Glycosylator: a Python framework for the rapid modeling of glycans. - Thomas Lemmin; Cinque S. Soto (BMC Bioinform., 2019)

Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures. - Alexander M. Sevy; Cinque S. Soto; Robin G. Bombardi; Jens Meiler; James E. Crowe Jr. (BMC Bioinform., 2019)

PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. - Cinque S. Soto; Jessica A. Finn; Jordan R. Willis; Samuel B. Day; Robert S. Sinkovits; Taylor Jones; Samuel Schmitz; Jens Meiler; Andre Branchizio; James E. Crowe Jr. (BMC Bioinform., 2020)

ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases. - Taylor Jones; Samuel B. Day; Luke Myers; James E. Crowe Jr.; Cinque S. Soto (Bioinform., 2021)