Precise detection of rearrangement breakpoints in mammalian chromosomes. - Claire Lemaitre; Eric Tannier; Christian Gautier; Marie-France Sagot (BMC Bioinform., 2008)

A small trip in the untranquil world of genomes: A survey on the detection and analysis of genome rearrangement breakpoints. - Claire Lemaitre; Marie-France Sagot (Theor. Comput. Sci., 2008)

Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassure. (Chromosomal rearrangements in mammalian genomes : characterising the breakpoints). - Claire Lemaitre (2008)

Cassis: detection of genomic rearrangement breakpoints. - Christian Baudet; Claire Lemaitre; Zanoni Dias; Christian Gautier; Eric Tannier; Marie-France Sagot (Bioinform., 2010)

A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships. - Claire Lemaitre; Aurélien Barré; Christine Citti; Florence Tardy; Francois Thiaucourt; Pascal Sirand-Pugnet; Patricia Thébault (BMC Bioinform., 2011)

Compareads: comparing huge metagenomic experiments. - Nicolas Maillet; Claire Lemaitre; Rayan Chikhi; Dominique Lavenier; Pierre Peterlongo (BMC Bioinform., 2012)

Mapping-Free and Assembly-Free Discovery of Inversion Breakpoints from Raw NGS Reads. - Claire Lemaitre; Liviu Ciortuz; Pierre Peterlongo (AlCoB, 2014)

GATB: Genome Assembly & Analysis Tool Box. - Erwan Drezen; Guillaume Rizk; Rayan Chikhi; Charles Deltel; Claire Lemaitre; Pierre Peterlongo; Dominique Lavenier (Bioinform., 2014)

MindTheGap: integrated detection and assembly of short and long insertions. - Guillaume Rizk; Anaïs Gouin; Rayan Chikhi; Claire Lemaitre (Bioinform., 2014)

Compression of high throughput sequencing data with probabilistic de Bruijn graph. - Gaëtan Benoit; Claire Lemaitre; Dominique Lavenier; Guillaume Rizk (CoRR, 2014)

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph. - Gaëtan Benoit; Claire Lemaitre; Dominique Lavenier; Erwan Drezen; Thibault Dayris; Raluca Uricaru; Guillaume Rizk (BMC Bioinform., 2015)

Multiple comparative metagenomics using multiset k-mer counting. - Gaëtan Benoit; Pierre Peterlongo; Mahendra Mariadassou; Erwan Drezen; Sophie Schbath; Dominique Lavenier; Claire Lemaitre (PeerJ Comput. Sci., 2016)

De Novo NGS Data Compression. - Gaëtan Benoit; Claire Lemaitre; Guillaume Rizk; Erwan Drezen; Dominique Lavenier (Algorithms for Next-Generation Sequencing Data, 2017)

SimkaMin: fast and resource frugal de novo comparative metagenomics. - Gaëtan Benoit; Mahendra Mariadassou; Stéphane Robin; Sophie Schbath; Pierre Peterlongo; Claire Lemaitre (Bioinform., 2020)

SVJedi: genotyping structural variations with long reads. - Lolita Lecompte; Pierre Peterlongo; Dominique Lavenier; Claire Lemaitre (Bioinform., 2020)

Méthodes bioinformatiques pour l'étude des Variants de Structure avec des données de séquençages génomiques. - Claire Lemaitre (2021)

SVJedi-graph: improving the genotyping of close and overlapping structural variants with long reads using a variation graph. - Sandra Romain; Claire Lemaitre (Bioinform., 2023)

MTG-Link: leveraging barcode information from linked-reads to assemble specific loci. - Anne Guichard; Fabrice Legeai; Denis Tagu; Claire Lemaitre (BMC Bioinform., 2023)