New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL. - Rolf Apweiler; Vivien Junker; Alain Gateau; Claire O'Donovan; Fiona Lang; Amos Bairoch (German Conference on Bioinformatics - Selected Papers, 1996)

New Developments in the Linking of Biological Databases and Computer-Generation of Annotation. - Rolf Apweiler; Vivien Junker; Alain Gateau; Claire O'Donovan; Fiona Lang; Amos Bairoch (German Conference on Bioinformatics, 1996)

Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL. - Rolf Apweiler; Alain Gateau; Sergio Contrino; Maria Jesus Martin; Vivien Junker; Claire O'Donovan; Fiona Lang; Nicoletta Mitaritonna; Stephanie Kappus; Amos Bairoch (ISMB, 1997)

SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. - Henning Hermjakob; Claire O'Donovan; Maria Jesus Martin; Fiona Lang; Rolf Apweiler (German Conference on Bioinformatics, 1998)

Removing redundancy in SWISS-PROT and TrEMBL. - Claire O'Donovan; Maria Jesus Martin; Eric Glémet; Jean-Jacques Codani; Rolf Apweiler (Bioinform., 1999)

High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL. - Claire O'Donovan; Maria Jesus Martin; Alexandre Gattiker; Elisabeth Gasteiger; Amos Bairoch; Rolf Apweiler (Briefings Bioinform., 2002)

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. - Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria Jesus Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider (Nucleic Acids Res., 2003)

The European Bioinformatics Institute's data resources. - Catherine Brooksbank; Evelyn Camon; Midori A. Harris; Michele Magrane; Maria Jesus Martin; Nicola J. Mulder; Claire O'Donovan; Helen E. Parkinson; Mary Ann Tuli; Rolf Apweiler; Ewan Birney; Alvis Brazma; et al. (Nucleic Acids Res., 2003)

UniProt: the Universal Protein knowledgebase. - Rolf Apweiler; Amos Bairoch; Cathy H. Wu; Winona C. Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria Jesus Martin; Darren A. Natale; et al. (Nucleic Acids Res., 2004)

The Universal Protein Resource (UniProt). - Amos Bairoch; Rolf Apweiler; Cathy H. Wu; Winona C. Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria Jesus Martin; Darren A. Natale; et al. (Nucleic Acids Res., 2005)

The Universal Protein Resource (UniProt): an expanding universe of protein information. - Cathy H. Wu; Rolf Apweiler; Amos Bairoch; Darren A. Natale; Winona C. Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria Jesus Martin; et al. (Nucleic Acids Res., 2006)

The Protein Feature Ontology: a tool for the unification of protein feature annotations. - Gabrielle A. Reeves; Karen Eilbeck; Michele Magrane; Claire O'Donovan; Luisa Montecchi-Palazzi; Midori A. Harris; Sandra E. Orchard; Rafael C. Jiménez; Andreas Prlic; Tim J. P. Hubbard; Henning Hermjakob; Janet M. Thornton (Bioinform., 2008)

QuickGO: a user tutorial for the web-based Gene Ontology browser. - Rachael P. Huntley; David Binns; Emily Dimmer; Daniel Barrell; Claire O'Donovan; Rolf Apweiler (Database J. Biol. Databases Curation, 2009)

QuickGO: a web-based tool for Gene Ontology searching. - David Binns; Emily Dimmer; Rachael P. Huntley; Daniel Barrell; Claire O'Donovan; Rolf Apweiler (Bioinform., 2009)

The GOA database in 2009 - an integrated Gene Ontology Annotation resource. - Daniel Barrell; Emily Dimmer; Rachael P. Huntley; David Binns; Claire O'Donovan; Rolf Apweiler (Nucleic Acids Res., 2009)

Biocurators and Biocuration: surveying the 21st century challenges. - Sarah W. Burge; Teresa K. Attwood; Alex Bateman; Tanya Z. Berardini; J. Michael Cherry; Claire O'Donovan; Ioannis Xenarios; Pascale Gaudet (Database J. Biol. Databases Curation, 2012)

AntiFam: a tool to help identify spurious ORFs in protein annotation. - Ruth Y. Eberhardt; Daniel H. Haft; Marco Punta; Maria Jesus Martin; Claire O'Donovan; Alex Bateman (Database J. Biol. Databases Curation, 2012)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

The UniProt-GO Annotation database in 2011. - Emily C. Dimmer; Rachael P. Huntley; Yasmin Alam-Faruque; Tony Sawford; Claire O'Donovan; Maria Jesus Martin; Benoit Bely; Paul Browne; Wei Mun Chan; Ruth Y. Eberhardt; Michael Gardner; Kati Laiho; et al. (Nucleic Acids Res., 2012)

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. - Pascale Gaudet; Monica C. Munoz-Torres; Marc Robinson-Rechavi; Teresa K. Attwood; Alex Bateman; J. Michael Cherry; Renate Kania; Claire O'Donovan; Chisato Yamasaki (Database J. Biol. Databases Curation, 2013)

Use of Gene Ontology Annotation to understand the peroxisome proteome in humans. - Prudence Mutowo-Meullenet; Rachael P. Huntley; Emily C. Dimmer; Yasmin Alam-Faruque; Tony Sawford; Maria Jesus Martin; Claire O'Donovan; Rolf Apweiler (Database J. Biol. Databases Curation, 2013)

The EBI enzyme portal. - Rafael Alcántara; Joseph Onwubiko; Hong Cao; Paula de Matos; Jennifer A. Cham; Julius O. B. Jacobsen; Gemma L. Holliday; Julia D. Fischer; Syed Asad Rahman; Bijay Jassal; Mickael Goujon; Francis Rowland; et al. (Nucleic Acids Res., 2013)

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource. - Sameer Velankar; Jose M. Dana; Julius O. B. Jacobsen; Glen van Ginkel; Paul J. Gane; Jie Luo; Thomas J. Oldfield; Claire O'Donovan; Maria Jesus Martin; Gerard J. Kleywegt (Nucleic Acids Res., 2013)

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data. - Sylvain Poux; Michele Magrane; Cecilia N. Arighi; Alan J. Bridge; Claire O'Donovan; Kati Laiho (Database J. Biol. Databases Curation, 2014)

UniProt-GOA: A Central Resource for Data Integration and GO Annotation. - Mélanie Courtot; Aleksandra Shypitsyna; Elena Speretta; Alexander Holmes; Tony Sawford; Tony Wardell; Maria Jesus Martin; Claire O'Donovan (SWAT4LS, 2015)

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. - Patricia C. Babbitt; Pantelis G. Bagos; Amos Bairoch; Alex Bateman; Arnaud Chatonnet; Mark Jinan Chen; David J. Craik; Robert D. Finn; David E. Gloriam; Daniel H. Haft; Bernard Henrissat; Gemma L. Holliday; et al. (Database J. Biol. Databases Curation, 2015)

The GOA database: Gene Ontology annotation updates for 2015. - Rachael P. Huntley; Tony Sawford; Prudence Mutowo-Meullenet; Aleksandra Shypitsyna; Carlos Bonilla; Maria Jesus Martin; Claire O'Donovan (Nucleic Acids Res., 2015)

Minimizing proteome redundancy in the UniProt Knowledgebase. - Borisas Bursteinas; Ramona Britto; Benoit Bely; Andrea H. Auchincloss; Catherine Rivoire; Nicole Redaschi; Claire O'Donovan; Maria Jesus Martin (Database J. Biol. Databases Curation, 2016)

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. - Sefa Kiliç; Dinara M. Sagitova; Shoshannah Wolfish; Benoit Bely; Mélanie Courtot; Stacy Ciufo; Tatiana A. Tatusova; Claire O'Donovan; Marcus C. Chibucos; Maria Jesus Martin; Ivan Erill (Database J. Biol. Databases Curation, 2016)

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB. - Tunca Dogan; Alistair MacDougall; Rabie Saidi; Diego Poggioli; Alex Bateman; Claire O'Donovan; Maria Jesus Martin (Bioinform., 2016)

The future of metabolomics in ELIXIR. - Merlijn N. van Rijswijk; Charlie Beirnaert; Christophe Caron; Marta Cascante; Victoria Dominguez Del Angel; Warwick B. Dunn; Timothy M. D. Ebbels; Franck Giacomoni; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; Jose L. Izquierdo-García; et al. (F1000Research, 2017)

Open Targets: a platform for therapeutic target identification and validation. - Gautier Koscielny; Peter An; Denise Carvalho-Silva; Jennifer A. Cham; Luca Fumis; Rippa Gasparyan; Samiul Hasan; Nikiforos Karamanis; Michael Maguire; Eliseo Papa; Andrea Pierleoni; Miguel Pignatelli; et al. (Nucleic Acids Res., 2017)

A New Corpus to Support Text Mining for the Curation of Metabolites in the ChEBI Database. - Matthew Shardlow; Nhung T. H. Nguyen 001; Gareth I. Owen; Claire O'Donovan; Andrew Leach; John McNaught; Steve Turner; Sophia Ananiadou (LREC, 2018)

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins. - Jose M. Dana; Aleksandras Gutmanas; Nidhi Tyagi; Guoying Qi; Claire O'Donovan; Maria Jesus Martin; Sameer Velankar (Nucleic Acids Res., 2019)

MetaboLights: a resource evolving in response to the needs of its scientific community. - Kenneth Haug; Keeva Cochrane; Venkata Chandrasekhar Nainala; Mark Williams; Jiakang Chang; Kalai Vanii Jayaseelan; Claire O'Donovan (Nucleic Acids Res., 2020)

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. - Alistair MacDougall; Vladimir Volynkin; Rabie Saidi; Diego Poggioli; Hermann Zellner; Emma Hatton-Ellis; Vishal Joshi; Claire O'Donovan; Sandra E. Orchard; Andrea H. Auchincloss; Delphine Baratin; Jerven T. Bolleman; et al. (Bioinform., 2021)