Evidence for human microRNA-offset RNAs in small RNA sequencing data. - David Langenberger; Clara Bermudez-Santana; Jana Hertel; Steve Hoffmann; Philipp Khaitovich; Peter F. Stadler (Bioinform., 2009)

Identification and Classification of Small RNAs in Transcriptome Sequence Data. - David Langenberger; Clara Bermudez-Santana; Peter F. Stadler; Steve Hoffmann (Pacific Symposium on Biocomputing, 2010)

tRNomics: Genomic Organization and Processing Patterns of tRNAs - Clara Bermudez-Santana (2010)

Systematic computational hunting for small RNAs derived from ncRNAs during dengue virus infection in endothelial HMEC-1 cells. - Aimer Gutierrez-Diaz; Steve Hoffmann; Juan Carlos Gallego-Gómez; Clara Bermudez-Santana (Frontiers Bioinform., 2024)