DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data. - Clare Pacini; Francesco Iorio; Emanuel J. V. Gonçalves; Murat Iskar; Thomas Klabunde; Peer Bork; Julio Saez-Rodriguez (Bioinform., 2013)

Empirical Bayes method for reducing false discovery rates of correlation matrices with block diagonal structure. - Clare Pacini; James W. Ajioka; Gos Micklem (BMC Bioinform., 2017)