Design of a compartmentalized shotgun assembler for the human genome. - Daniel H. Huson; Knut Reinert; Saul A. Kravitz; Karin A. Remington; Arthur L. Delcher; Ian M. Dew; Michael Flanigan; Aaron L. Halpern; Zhongwu Lai; Clark M. Mobarry; Granger G. Sutton; Eugene W. Myers (ISMB (Supplement of Bioinformatics), 2001)

Efficiently detecting polymorphisms during the fragment assembly process. - Daniel P. Fasulo; Aaron L. Halpern; Ian M. Dew; Clark M. Mobarry (ISMB, 2002)

ThurGood: Evaluating Assembly-to-Assembly Mapping. - Hagit Shatkay; Jason R. Miller; Clark M. Mobarry; Michael Flanigan; Shibu Yooseph; Granger G. Sutton (J. Comput. Biol., 2004)

A Space-Efficient Construction of the Burrows-Wheeler Transform for Genomic Data. - Ross A. Lippert; Clark M. Mobarry; Brian Walenz (J. Comput. Biol., 2005)

Finding Anchors for Genomic Sequence Comparison. - Ross A. Lippert; Xiaoyue Zhao; Liliana Florea; Clark M. Mobarry; Sorin Istrail (J. Comput. Biol., 2005)

Aggressive assembly of pyrosequencing reads with mates. - Jason R. Miller; Arthur L. Delcher; Sergey Koren; Eli Venter; Brian Walenz; Anushka Brownley; Justin Johnson 002; Kelvin Li; Clark M. Mobarry; Granger G. Sutton (Bioinform., 2008)