A Multi-agent System Simulating Human Splice Site Recognition. - Laurence Vignal; Frédérique Lisacek; Joël Quinqueton; Yves D'Aubenton-Carafa; Claude Thermes (Comput. Chem., 1999)

Large-scale analysis of the human genome: From DNA sequence analysis to the modeling of replication in higher eukaryotes. - Alain Arneodo; Yves D'Aubenton-Carafa; Benjamin Audit; Edward-Benedict Brodie; Samuel Nicolay; Philippe Saint-Jean; Claude Thermes; Marie Touchon; Cédric Vaillant (EUSIPCO, 2006)

Fractals and Wavelets: What Can We Learn on Transcription and Replication from Wavelet-Based Multifractal Analysis of DNA Sequences. - Alain Arneodo; Benjamin Audit; Edward-Benedict Brodie of Brodie; Samuel Nicolay; Marie Touchon; Yves D'Aubenton-Carafa; Maxime Huvet; Claude Thermes (Encyclopedia of Complexity and Systems Science, 2009)

Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome. - Guillaume Guilbaud; Aurélien Rappailles; Antoine Baker; Chun-Long Chen; Alain Arneodo; Arach Goldar; Yves D'Aubenton-Carafa; Claude Thermes; Benjamin Audit; Olivier Hyrien (PLoS Comput. Biol., 2011)

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. - Julien Allali; Cédric Saule; Cédric Chauve; Yves D'Aubenton-Carafa; Alain Denise; Christine Drevet; Pascal Ferraro; Daniel Gautheret; Claire Herrbach; Fabrice Leclerc; Antoine de Monte; Aïda Ouangraoua; et al. (Adv. Bioinformatics, 2012)

Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines. - Antoine Baker; Benjamin Audit; Chun-Long Chen; Benoit Moindrot; Antoine Leleu; Guillaume Guilbaud; Aurélien Rappailles; Cédric Vaillant; Arach Goldar; Fabien Mongelard; Yves D'Aubenton-Carafa; Olivier Hyrien; et al. (PLoS Comput. Biol., 2012)

Relating mammalian replication program to large-scale chromatin folding. - Benjamin Audit; Antoine Baker; Rasha E. Boulos; Hanna Julienne; Alain Arneodo; C. L. Chen; Yves d'Aubenton-Carafa; Claude Thermes; Arach Goldar; Guillaume Guilbaud; Aurélien Rappailles; Olivier Hyrien (BCB, 2013)

CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data. - Delphine Naquin; Yves d'Aubenton-Carafa; Claude Thermes; Maud Silvain (BMC Bioinform., 2014)

Large replication skew domains delimit GC-poor gene deserts in human. - Lamia Zaghloul; Guénola Drillon; Rasha E. Boulos; Françoise Argoul; Claude Thermes; Alain Arneodo; Benjamin Audit (Comput. Biol. Chem., 2014)