A hint to search for metalloproteins in gene banks. - Claudia Andreini; Ivano Bertini; Antonio Rosato (Bioinform., 2004)

Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence. - Sauro Menchetti; Andrea Passerini; Paolo Frasconi; Claudia Andreini; Antonio Rosato (RECOMB, 2006)

Predicting zinc binding at the proteome level. - Andrea Passerini; Claudia Andreini; Sauro Menchetti; Antonio Rosato; Paolo Frasconi (BMC Bioinform., 2007)

Metal-MACiE: a database of metals involved in biological catalysis. - Claudia Andreini; Ivano Bertini; Gabriele Cavallaro; Gemma L. Holliday; Janet M. Thornton (Bioinform., 2009)

A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms. - Claudia Andreini; Ivano Bertini; Gabriele Cavallaro; Leonardo Decaria; Antonio Rosato (J. Chem. Inf. Model., 2011)

FindGeo: a tool for determining metal coordination geometry. - Claudia Andreini; Gabriele Cavallaro; Serena Lorenzini (Bioinform., 2012)

MACiE: exploring the diversity of biochemical reactions. - Gemma L. Holliday; Claudia Andreini; Julia D. Fischer; Syed Asad Rahman; Daniel E. Almonacid; Sophie T. Williams; William R. Pearson (Nucleic Acids Res., 2012)

MetalS2: A Tool for the Structural Alignment of Minimal Functional Sites in Metal-Binding Proteins and Nucleic Acids. - Claudia Andreini; Gabriele Cavallaro; Antonio Rosato; Yana Valasatava (J. Chem. Inf. Model., 2013)

MetalPDB: a database of metal sites in biological macromolecular structures. - Claudia Andreini; Gabriele Cavallaro; Serena Lorenzini; Antonio Rosato (Nucleic Acids Res., 2013)

MetalPredator: a web server to predict iron-sulfur cluster binding proteomes. - Yana Valasatava; Antonio Rosato; Lucia Banci; Claudia Andreini (Bioinform., 2016)

MetalPDB in 2018: a database of metal sites in biological macromolecular structures. - Valeria Putignano; Antonio Rosato; Lucia Banci; Claudia Andreini (Nucleic Acids Res., 2018)

Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc(II)-Binding Residues in Sites with Four Protein Ligands. - Marina Macchiagodena; Marco Pagliai; Claudia Andreini; Antonio Rosato; Piero Procacci (J. Chem. Inf. Model., 2019)

Learning to Identify Physiological and Adventitious Metal-Binding Sites in the Three-Dimensional Structures of Proteins by Following the Hints of a Deep Neural Network. - Vincenzo Laveglia; Andrea Giachetti 002; Davide Sala; Claudia Andreini; Antonio Rosato (J. Chem. Inf. Model., 2022)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)

Hunting down zinc(II)-binding sites in proteins with distance matrices. - Vincenzo Laveglia; Milana Bazayeva; Claudia Andreini; Antonio Rosato (Bioinform., 2023)

Benchmarking Zinc-Binding Site Predictors: A Comparative Analysis of Structure-Based Approaches. - Cosimo Ciofalo; Vincenzo Laveglia; Claudia Andreini; Antonio Rosato (J. Chem. Inf. Model., 2025)

Correction to "Benchmarking Zinc-Binding Site Predictors: A Comparative Analysis of Structure-Based Approaches". - Cosimo Ciofalo; Vincenzo Laveglia; Claudia Andreini; Antonio Rosato (J. Chem. Inf. Model., 2025)