The Footprint Sorting Problem. - Claudia Fried; Wim Hordijk; Sonja J. Prohaska; Claus R. Stadler; Peter F. Stadler (J. Chem. Inf. Model., 2004)

Multiple sequence alignments of partially coding nucleic acid sequences. - Roman R. Stocsits; Ivo L. Hofacker; Claudia Fried; Peter F. Stadler (BMC Bioinform., 2005)

Evolutionary patterns of non-coding RNAs. - Athanasius F. Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L. Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J. Prohaska; Bärbel M. R. Stadler; Peter F. Stadler; et al. (Theory Biosci., 2005)