Rate Matrices for Analyzing Large Families of Protein Sequences. - Claudine Devauchelle; Alexander Grossmann; Alain Hénaut; Matthias Holschneider; M. Monnerot; Jean-Loup Risler; Bruno Torrésani (J. Comput. Biol., 2002)

Integer linear programming as a tool for constructing trees from quartet data. - Jan Weyer-Menkhoff; Claudine Devauchelle; Alexander Grossmann; Stefan Grünewald (Comput. Biol. Chem., 2005)

Comparing sequences without using alignments: application to HIV/SIV subtyping. - Gilles Didier; Laurent Debomy; Maude Pupin; Ming Zhang; Alexander Grossmann; Claudine Devauchelle; Ivan Laprevotte (BMC Bioinform., 2007)

MS4 - Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences. - Eduardo Corel; Florian Pitschi; Ivan Laprevotte; Gilles Grasseau; Gilles Didier; Claudine Devauchelle (BMC Bioinform., 2010)

Automatic detection of anchor points for multiple sequence alignment. - Florian Pitschi; Claudine Devauchelle; Eduardo Corel (BMC Bioinform., 2010)

Variable length local decoding and alignment-free sequence comparison. - Gilles Didier; Eduardo Corel; Ivan Laprevotte; Alexander Grossmann; Claudine Landès-Devauchelle (Theor. Comput. Sci., 2012)