Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems. - Duccio Medini; Antonello Covacci; Claudio Donati (PLoS Comput. Biol., 2006)

A Novel Computational Method Identifies Intra- and Inter-Species Recombination Events in Staphylococcus aureus and Streptococcus pneumoniae. - Lisa Sanguinetti; Simona Toti; Valerio Reguzzi; Fabio Bagnoli; Claudio Donati (PLoS Comput. Biol., 2012)

Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting. - Davide Albanese; Carlotta De Filippo; Duccio Cavalieri; Claudio Donati (PLoS Comput. Biol., 2015)