Clustering Bacteria Species Using Neural Gas: Preliminary Study. - Claudio Mirabello; Riccardo Rizzo; Alfonso Urso; Salvatore Gaglio (CIBB, 2008)

Porter, PaleAle 4.0: high-accuracy prediction of protein secondary structure and relative solvent accessibility. - Claudio Mirabello; Gianluca Pollastri (Bioinform., 2013)

Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks. - Predrag Kukic; Claudio Mirabello; Giuseppe Tradigo; Ian Walsh; Pierangelo Veltri; Gianluca Pollastri (BMC Bioinform., 2014)

Topology independent structural matching discovers novel templates for protein interfaces. - Claudio Mirabello; Björn Wallner (Bioinform., 2018)

InterPep2: global peptide-protein docking using interaction surface templates. - Isak Johansson-Åkhe; Claudio Mirabello; Björn Wallner (Bioinform., 2020)

InterLig: improved ligand-based virtual screening using topologically independent structural alignments. - Claudio Mirabello; Björn Wallner (Bioinform., 2020)

InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network. - Isak Johansson-Åkhe; Claudio Mirabello; Björn Wallner (Frontiers Bioinform., 2021)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)

MassiveFold: unveiling AlphaFold's hidden potential with optimized and parallelized massive sampling. - Nessim Raouraoua; Claudio Mirabello; Thibaut Véry; Christophe Blanchet; Björn Wallner; Marc F. Lensink; Guillaume Brysbaert (Nat. Comput. Sci., 2024)