Parallel Repetition of MIP(2, 1) Systems. - Clemens Gröpl; Martin Skutella (Lectures on Proof Verification and Approximation Algorithms, 1997)

Size and Structure of Random Ordered Binary Decision Diagrams (Extended Abstract). - Clemens Gröpl; Hans Jürgen Prömel; Anand Srivastav (STACS, 1998)

Binary decision diagrams for random Boolean functions. - Clemens Gröpl (1999)

Lower Bounds for Approximation Algorithms for the Steiner Tree Problem. - Clemens Gröpl; Stefan Hougardy; Till Nierhoff; Hans Jürgen Prömel (WG, 2001)

On the evolution of the worst-case OBDD size. - Clemens Gröpl; Hans Jürgen Prömel; Anand Srivastav (Inf. Process. Lett., 2001)

Steiner trees in uniformly quasi-bipartite graphs. - Clemens Gröpl; Stefan Hougardy; Till Nierhoff; Hans Jürgen Prömel (Inf. Process. Lett., 2002)

Accelerating screening of 3D protein data with a graph theoretical approach. - Cornelius Frömmel; Christoph Gille; Andrean Goede; Clemens Gröpl; Stefan Hougardy; Till Nierhoff; Robert Preissner; Martin Thimm (Bioinform., 2003)

Ordered binary decision diagrams and the Shannon effect. - Clemens Gröpl; Hans Jürgen Prömel; Anand Srivastav (Discret. Appl. Math., 2004)

Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples. - Clemens Gröpl; Eva Lange; Knut Reinert; Oliver Kohlbacher; Marc Sturm; Christian G. Huber; Bettina M. Mayr; Christoph L. Klein (CompLife, 2005)

An Algorithm for Feature Finding in LC/MS Raw Data. - Clemens Gröpl (Computational Proteomics, 2005)

High-accuracy peak picking of proteomics data. - Eva Lange; Clemens Gröpl; Oliver Kohlbacher; Andreas Hildebrandt 001 (Computational Proteomics, 2005)

Sampling Unlabeled Biconnected Planar Graphs. - Manuel Bodirsky; Clemens Gröpl; Mihyun Kang (ISAAC, 2005)

High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. - Eva Lange; Clemens Gröpl; Knut Reinert; Oliver Kohlbacher; Andreas Hildebrandt 001 (Pacific Symposium on Biocomputing, 2006)

A geometric approach for the alignment of liquid chromatography - mass spectrometry data. - Eva Lange; Clemens Gröpl; Ole Schulz-Trieglaff; Andreas Leinenbach; Christian G. Huber; Knut Reinert (ISMB/ECCB (Supplement of Bioinformatics), 2007)

A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. - Ole Schulz-Trieglaff; Rene Hussong; Clemens Gröpl; Andreas Hildebrandt 001; Knut Reinert (RECOMB, 2007)

TOPP - the OpenMS proteomics pipeline. - Oliver Kohlbacher; Knut Reinert; Clemens Gröpl; Eva Lange; Nico Pfeifer; Ole Schulz-Trieglaff; Marc Sturm (Bioinform., 2007)

Generating labeled planar graphs uniformly at random. - Manuel Bodirsky; Clemens Gröpl; Mihyun Kang (Theor. Comput. Sci., 2007)

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements. - Eva Lange; Ralf Tautenhahn; Steffen Neumann; Clemens Gröpl (BMC Bioinform., 2008)

LC-MSsim - a simulation software for liquid chromatography mass spectrometry data. - Ole Schulz-Trieglaff; Nico Pfeifer; Clemens Gröpl; Oliver Kohlbacher; Knut Reinert (BMC Bioinform., 2008)

OpenMS - An open-source software framework for mass spectrometry. - Marc Sturm; Andreas Bertsch; Clemens Gröpl; Andreas Hildebrandt 001; Rene Hussong; Eva Lange; Nico Pfeifer; Ole Schulz-Trieglaff; Alexandra Zerck; Knut Reinert; Oliver Kohlbacher (BMC Bioinform., 2008)

Computational Quantification of Peptides from LC-MS Data. - Ole Schulz-Trieglaff; Rene Hussong; Clemens Gröpl; Andreas Leinenbach; Andreas Hildebrandt 001; Christian G. Huber; Knut Reinert (J. Comput. Biol., 2008)

Generating unlabeled connected cubic planar graphs uniformly at random. - Manuel Bodirsky; Clemens Gröpl; Mihyun Kang (Random Struct. Algorithms, 2008)