nQuire: a statistical framework for ploidy estimation using next generation sequencing. - Clemens L. Weiß; Marina Pais; Liliana M. Cano; Sophien Kamoun; Hernán A. Burbano (BMC Bioinform., 2018)

chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data. - Markus J. Ankenbrand; Simon Pfaff; Niklas Terhoeven; Musga Qureischi; Maik Gündel; Clemens L. Weiß; Thomas Hackl; Frank Förster (J. Open Source Softw., 2018)