HLA-MA: simple yet powerful matching of samples using HLA typing results. - Clemens Messerschmidt; Manuel Holtgrewe; Dieter Beule (Bioinform., 2017)

SigsPack, a package for cancer mutational signatures. - Franziska Schumann; Eric Blanc; Clemens Messerschmidt; Thomas Blankenstein; Antonia Busse; Dieter Beule (BMC Bioinform., 2019)

DigestiFlow: from BCL to FASTQ with ease. - Manuel Holtgrewe; Clemens Messerschmidt; Mikko Nieminen; Dieter Beule (Bioinform., 2020)

Portability of Scientific Workflows in NGS Data Analysis: A Case Study. - Christopher Schiefer; Marc Bux; Jörgen Brandt; Clemens Messerschmidt; Knut Reinert; Dieter Beule; Ulf Leser (CoRR, 2020)

Neuroblastoma signalling models unveil combination therapies targeting feedback-mediated resistance. - Mathurin Dorel; Bertram Klinger; Tommaso Mari; Joern Toedling; Eric Blanc; Clemens Messerschmidt; Michal Nadler-Holly; Matthias Ziehm; Anja Sieber; Falk Hertwig; Dieter Beule; Angelika Eggert; et al. (PLoS Comput. Biol., 2021)