Cerco: Supporting Range Queries with a Hierarchically Structured Peer-to-Peer System. - Simon Rieche; Klaus Wehrle; Leo Petrak; Clemens Wrzodek (LCN, 2006)

ModuleMaster: A new tool to decipher transcriptional regulatory networks. - Clemens Wrzodek; Adrian Schröder; Andreas Dräger; Dierk Wanke; Kenneth W. Berendzen; Marcel Kronfeld; Klaus Harter; Andreas Zell (Biosyst., 2010)

Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization. - Adrian Schröder; Clemens Wrzodek; Johannes Wollnik; Andreas Dräger; Dierk Wanke; Kenneth W. Berendzen; Andreas Zell (IEEE Congress on Evolutionary Computation, 2011)

JSBML: a flexible Java library for working with SBML. - Andreas Dräger; Nicolas Rodriguez 001; Marine Dumousseau; Alexander Dörr; Clemens Wrzodek; Nicolas Le Novère; Andreas Zell; Michael Hucka (Bioinform., 2011)

Inferring statin-induced gene regulatory relationships in primary human hepatocytes. - Adrian Schröder; Johannes Wollnik; Clemens Wrzodek; Andreas Dräger; Michael Bonin; Oliver Burk; Maria Thomas; Wolfgang E. Thasler; Ulrich M. Zanger; Andreas Zell (Bioinform., 2011)

KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats. - Clemens Wrzodek; Andreas Dräger; Andreas Zell (Bioinform., 2011)

Qualitative translation of relations from BioPAX to SBML qual. - Finja Büchel; Clemens Wrzodek; Florian Mittag; Andreas Dräger; Johannes Eichner; Nicolas Rodriguez 001; Nicolas Le Novère; Andreas Zell (Bioinform., 2012)

Pathway-based visualization of cross-platform microarray datasets. - Clemens Wrzodek; Johannes Eichner; Andreas Zell (Bioinform., 2012)

InCroMAP: integrated analysis of cross-platform microarray and pathway data. - Clemens Wrzodek; Johannes Eichner; Finja Büchel; Andreas Zell (Bioinform., 2013)

Path2Models: large-scale generation of computational models from biochemical pathway maps. - Finja Büchel; Nicolas Rodriguez 001; Neil Swainston; Clemens Wrzodek; Tobias Czauderna; Roland Keller; Florian Mittag; Michael Schubert; Mihai Glont; Martin Golebiewski; Martijn P. van Iersel; Sarah M. Keating; et al. (BMC Syst. Biol., 2013)

Precise generation of systems biology models from KEGG pathways. - Clemens Wrzodek; Finja Büchel; Manuel Ruff; Andreas Dräger; Andreas Zell (BMC Syst. Biol., 2013)

Inference and integration of biochemical networks with multilayered omics data. - Clemens Wrzodek (Verlag Dr. Hut, 2013)

JSBML 1.0: providing a smorgasbord of options to encode systems biology models. - Nicolas Rodriguez 001; Alex Thomas; Leandro H. Watanabe; Ibrahim Y. Vazirabad; Victor Kofia; Harold F. Gómez; Florian Mittag; Jakob Matthes; Jan Rudolph; Finja Wrzodek; Eugen Netz; Alexander Diamantikos; et al. (Bioinform., 2015)

Prediction of polyspecificity from antibody sequence data by machine learning. - Szabolcs Elias; Clemens Wrzodek; Charlotte M. Deane; Alain C. Tissot; Stefan Klostermann; Francesca Ros (Frontiers Bioinform., 2023)