A clinical information system (CIS) for ambulatory care. - Clement J. McDonald; Bharat K. Bhargava; David Jeris (AFIPS National Computer Conference, 1975)

CARE: A Real World Medical Knowledge Base. - Clement J. McDonald; Lonnie Blevins; Tull T. Glazener; Larry Lemmon; Douglas K. Martin; Mike Valenza (COMPCON, 1984)

A plea for controlled trials in medical informatics. - William M. Tierney; J. Marc Overhage; Clement J. McDonald (J. Am. Medical Informatics Assoc., 1994)

Case Report: Computerizing Guidelines to Improve Care and Patient Outcomes: The Example of Heart Failure. - William M. Tierney; J. Marc Overhage; Blaine Y. Takesue; Lisa E. Harris; Michael D. Murray; Dennis L. Vargo; Clement J. McDonald (J. Am. Medical Informatics Assoc., 1995)

Testing Informatics Innovations: The Value of Negative Trials. - William M. Tierney; Clement J. McDonald (J. Am. Medical Informatics Assoc., 1996)

Theater-Style Demonstration: The Regenstrief Medical Record System 1997: A System for Clinical, Pervasive and City-Wide Computing. - Clement J. McDonald; J. Marc Overhage; William M. Tierney; Paul R. Dexter; Blaine Y. Takesue; Brenda Smith; Terry Hogan; Lonnie Blevins; Jill Warvel; Jeff S. Warvel; Jim Meeks-Johnson; Larry Lemmon; et al. (AMIA, 1997)

Viewpoint: The Barriers to Electronic Medical Record Systems and How to Overcome Them. - Clement J. McDonald (J. Am. Medical Informatics Assoc., 1997)

Research Paper: A Randomized Trial of "Corollary Orders" to Prevent Errors of Omission. - J. Marc Overhage; William M. Tierney; Xiao-Hua Zhou; Clement J. McDonald (J. Am. Medical Informatics Assoc., 1997)

The Regenstrief Medical Record System 1998: A System for City-Wide Computing. - Clement J. McDonald; J. Marc Overhage; William M. Tierney; Paul R. Dexter; Jeffrey G. Suico; Atif Zafar; Brenda Smith; Terry Hogan; Lonnie Blevins; Jill Warvel; Jeff S. Warvel; Jim Meeks-Johnson; et al. (AMIA, 1998)

Technical Milestone: Development of the Logical Observation Identifier Names and Codes (LOINC) Vocabulary. - Stanley M. Huff; Roberto A. Rocha; Clement J. McDonald; Georges J. E. De Moor; Tom Fiers; W. Dean Bidgood Jr.; Arden W. Forrey; William G. Francis; Wayne R. Tracy; Dennis Leavelle; Frank Stalling; Brian Griffin; et al. (J. Am. Medical Informatics Assoc., 1998)

The Regenstrief Medical Record System 1999: Sharing Data Between Hospitals. - Clement J. McDonald; J. Marc Overhage; Paul R. Dexter; William M. Tierney; Jeffrey G. Suico; Alex M. Aisen; Atif Zafar; Gunther Schadow; Lonnie Blevins; Jill Warvel; Jeff S. Warvel; Jim Meeks-Johnson; et al. (AMIA, 1999)

Influences of the Unified Service Action Model on the HL7 Reference Information Model. - Daniel C. Russler; Gunther Schadow; Charles N. Mead; Timothy Snyder; Linda M. Quade; Clement J. McDonald (AMIA, 1999)

The Regenstrief Medical Record System: a quarter century experience. - Clement J. McDonald; J. Marc Overhage; William M. Tierney; Paul R. Dexter; Douglas K. Martin; Jeffrey G. Suico; Atif Zafar; Gunther Schadow; Lonnie Blevins; Tull T. Glazener; Jim Meeks-Johnson; Larry Lemmon; et al. (Int. J. Medical Informatics, 1999)

Model Formulation: Units of Measure in Clinical Information Systems. - Gunther Schadow; Clement J. McDonald; Jeffrey G. Suico; Ulrich Föhring; Thomas Tolxdorff (J. Am. Medical Informatics Assoc., 1999)

Technology Evaluation: Continuous Speech Recognition for Clinicians. - Atif Zafar; J. Marc Overhage; Clement J. McDonald (J. Am. Medical Informatics Assoc., 1999)

The regenstrief medical record system 2000: Expanding the breadth and depth of a community wide EMR. - J. Marc Overhage; Clement J. McDonald; Jeffrey G. Suico (AMIA, 2000)

Integrating medical information and knowledge in the HL7 RIM. - Gunther Schadow; Daniel C. Russler; Charles N. Mead; Clement J. McDonald (AMIA, 2000)

Bedside vital signs capture for the non-ICU setting-an open source, PC-based solution. - Philip J. Kroth; Anne W. Belsito; J. Marc Overhage; Clement J. McDonald (AMIA, 2001)

An Open-source XML-based Java Implementation of the Medical Gopher Order and Note Writing Tool. - Burke W. Mamlin; Lonnie Blevins; Jeff S. Warvel; Clement J. McDonald (AMIA, 2001)

The Regenstrief Medical Record System: 30 Years of Learning. - Clement J. McDonald; Michael Barnes; J. Marc Overhage; Jeffrey G. Suico; Paul R. Dexter; Gunther Schadow; Burke W. Mamlin; Atif Zafar; William M. Tierney; Lonnie Blevins; Larry Lemmon; Tull T. Glazener; et al. (AMIA, 2001)

Integration of radiographic images with an electronic medical record. - J. Marc Overhage; Alex M. Aisen; Michael Barnes; Mark Tucker; Clement J. McDonald (AMIA, 2001)

Representing and querying conceptual graphs with relational database management systems is possible. - Gunther Schadow; Michael Barnes; Clement J. McDonald (AMIA, 2001)

A comparison of a printed patient summary document with its electronic equivalent: early results. - Sean M. Thomas; J. Marc Overhage; Jeff S. Warvel; Clement J. McDonald (AMIA, 2001)

Secure Internet video conferencing for assessing acute medical problems in a nursing facility. - Michael Weiner 002; Gunther Schadow; Donald Lindbergh; Jill Warvel; Greg Abernathy; Paul R. Dexter; Clement J. McDonald (AMIA, 2001)

Conceptual alignment of electronic health record data with guideline and workflow knowledge. - Gunther Schadow; Daniel C. Russler; Clement J. McDonald (Int. J. Medical Informatics, 2001)

Research Paper: Controlled Trial of Direct Physician Order Entry: Effects on Physicians' Time Utilization in Ambulatory Primary Care Internal Medicine Practices. - J. Marc Overhage; Susan M. Perkins; William M. Tierney; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2001)

A modern optical character recognition system in a real world clinical setting: some accuracy and feasibility observations. - Paul G. Biondich; J. Marc Overhage; Paul R. Dexter; Stephen M. Downs; Larry Lemmon; Clement J. McDonald (AMIA, 2002)

Analysis of identifier performance using a deterministic linkage algorithm. - Shaun J. Grannis; J. Marc Overhage; Clement J. McDonald (AMIA, 2002)

The Regenstrief Medical Record System 2002: Focus on the Medical Gopher Clinical Workstation. - Clement J. McDonald; J. Marc Overhage; Paul R. Dexter; Michael Barnes; Jeffrey G. Suico; Michael Weiner 002; Gunther Schadow; Greg Abernathy; William M. Tierney; Lonnie Blevins; Larry Lemmon; Tull T. Glazener; et al. (AMIA, 2002)

A successful technique for removing names in pathology reports using an augmented search and replace method. - Sean M. Thomas; Burke W. Mamlin; Gunther Schadow; Clement J. McDonald (AMIA, 2002)

Conducting a study of Internet-based video conferencing for assessing acute medical problems in a nursing facility. - Michael Weiner 002; Gunther Schadow; Donald Lindbergh; Jill Warvel; Greg Abernathy; Susan M. Perkins; Paul R. Dexter; Clement J. McDonald (AMIA, 2002)

Using Adaptive Turnaround Documents to Electronically Acquire Structured Data in Clinical Settings. - Paul G. Biondich; Vibha Anand; Stephen M. Downs; Clement J. McDonald (AMIA, 2003)

Community Clinical Data Exchange for Emergency Medicine Patients. - John T. Finnell; J. Marc Overhage; Paul R. Dexter; Susan M. Perkins; Kathleen A. Lane; Clement J. McDonald (AMIA, 2003)

Analysis of a Probabilistic Record Linkage Technique without Human Review. - Shaun J. Grannis; J. Marc Overhage; Siu L. Hui; Clement J. McDonald (AMIA, 2003)

Automated Extraction and Normalization of Findings from Cancer-Related Free-Text Radiology Reports. - Burke W. Mamlin; Daniel T. Heinze; Clement J. McDonald (AMIA, 2003)

Extracting Structured Information from Free Text Pathology Reports. - Gunther Schadow; Clement J. McDonald (AMIA, 2003)

Clinicians' and Patients' Experiences and Satisfaction with Unscheduled, Nighttime, Internet-based Video Conferencing for Assessing Acute Medical Problems in a Nursing Facility. - Michael Weiner 002; Gunther Schadow; Donald Lindbergh; Jill Warvel; Greg Abernathy; Susan M. Perkins; Joanne Fyffe; Paul R. Dexter; Clement J. McDonald (AMIA, 2003)

Open Source software in medical informatics - why, how and what. - Clement J. McDonald; Gunther Schadow; Michael Barnes; Paul R. Dexter; J. Marc Overhage; Burke W. Mamlin; J. Michael McCoy (Int. J. Medical Informatics, 2003)

A practical method of linking data from Medicare claims and a comprehensive electronic medical records system. - Michael Weiner 002; Timothy E. Stump; Christopher M. Callahan; John N. Lewis; Clement J. McDonald (Int. J. Medical Informatics, 2003)

Case Report: Structure, Functions, and Activities of a Research Support Informatics Section. - Michael D. Murray; Faye E. Smith; Joanne Fox; Evgenia Y. Teal; Joseph G. Kesterson; Troy A. Stiffler; Roberta J. Ambuehl; Jane Wang; Maria Dibble; Dennis O. Benge; Leonard J. Betley; William M. Tierney; et al. (J. Am. Medical Informatics Assoc., 2003)

Real World Performance of Approximate String Comparators for use in Patient Matching. - Shaun J. Grannis; J. Marc Overhage; Clement J. McDonald (MedInfo, 2004)

A simple error classification system for understanding sources of error in automatic speech recognition and human transcription. - Atif Zafar; Burke W. Mamlin; Susan M. Perkins; Anne W. Belsito; J. Marc Overhage; Clement J. McDonald (Int. J. Medical Informatics, 2004)

Editorial Comments: Physicians, Information Technology, and Health Care Systems: A Journey, Not a Destination. - Clement J. McDonald; J. Marc Overhage; Burke W. Mamlin; Paul R. Dexter; William M. Tierney (J. Am. Medical Informatics Assoc., 2004)

In Support of Emergency Department Health Information Technology. - John T. Finnell; J. Marc Overhage; Clement J. McDonald (AMIA, 2005)

Computerized Reminders to Improve Isolation Rates of Patients with Drug-Resistant Infections: Design and Preliminary Results. - Abel N. Kho; Paul R. Dexter; Jeff S. Warvel; Marie Commiskey; Steve Wilson; Clement J. McDonald (AMIA, 2005)

Efficiency, Comprehensiveness and Cost-effectiveness when comparing Dictation and Electronic Templates for Operative Reports. - Mark Laflamme; Paul R. Dexter; Marilyn F. Graham; Siu L. Hui; Clement J. McDonald (AMIA, 2005)

SPIN Query Tools for De-identified Research on a Humongous Database. - Clement J. McDonald; Paul R. Dexter; Gunther Schadow; Henry C. Chueh; Greg Abernathy; John Hook; Lonnie Blevins; J. Marc Overhage; Jules J. Berman (AMIA, 2005)

Automated Mapping of Local Radiology Terms to LOINC. - Daniel J. Vreeman; Clement J. McDonald (AMIA, 2005)

Collaboration between the Medical Informatics Community and Guideline Authors: Fostering HIT Standard Development that Matters. - Paul G. Biondich; Stephen M. Downs; Aaron E. Carroll; Richard N. Shiffman; Clement J. McDonald (AMIA, 2006)

Computer Automated Detection of Head Orientation for Prevention of Wrong-Side Treatment Errors. - James D. Christensen; Gary C. Hutchins; Clement J. McDonald (AMIA, 2006)

A Natural Language Processing System to Extract and Code Concepts Relating to Congestive Heart Failure from Chest Radiology Reports. - Jeff Friedlin; Clement J. McDonald (AMIA, 2006)

Using A Natural Language Processing System to Extract and Code Family History Data from Admission Reports. - Jeff Friedlin; Clement J. McDonald (AMIA, 2006)

A Computerized Decision Support System Improves the Accuracy of Temperature Capture from Nursing Personnel at the Bedside. - Philip J. Kroth; Paul R. Dexter; J. Marc Overhage; Cynthia Knipe; Siu L. Hui; Anne W. Belsito; Clement J. McDonald (AMIA, 2006)

Demonstration of the Indianapolis SPIN Query Tool for De-identified Access to Content of the Indiana Network for Patient Care's (a Real RHIO) Database. - Clement J. McDonald; Lonnie Blevins; Paul R. Dexter; Gunther Schadow; John Hook; Greg Abernathy; Tammy Dugan; Andrew Martin; D. Ryan Phillips; Mary Davis (AMIA, 2006)

Integrative Specimen Information Service - a Campus-Wide Resource for Tissue Banking, Experimental Data Annotation, and Analysis Services. - Gunther Schadow; Rakesh Dhaval; Clement J. McDonald; Susanne Ragg (AMIA, 2006)

Extensible Stylesheet Language Formatting Objects (XSL-FO): a Tool to Transform Patient Data into Attractive Clinical Reports. - Linas Simonaitis; Anne W. Belsito; Jeff S. Warvel; Siu L. Hui; Clement J. McDonald (AMIA, 2006)

A Comparison of Intelligent Mapper and Document Similarity Scores for Mapping Local Radiology Terms to LOINC. - Daniel J. Vreeman; Clement J. McDonald (AMIA, 2006)

RxTerms - a drug interface terminology derived from RxNorm. - Kin Wah Fung; Clement J. McDonald; Bruce E. Bray (AMIA, 2008)

An effective computerized reminder for contact isolation of patients colonized or infected with resistant organisms. - Abel N. Kho; Paul R. Dexter; Jeff S. Warvel; Anne W. Belsito; Marie Commiskey; Stephen J. Wilson; Siu L. Hui; Clement J. McDonald (Int. J. Medical Informatics, 2008)

Application of Information Technology: A Software Tool for Removing Patient Identifying Information from Clinical Documents. - F. Jeff Friedlin; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2008)

Research Paper: Use of a Regional Health Information Exchange to Detect Crossover of Patients with MRSA between Urban Hospitals. - Abel N. Kho; Larry Lemmon; Marie Commiskey; Stephen J. Wilson; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2008)

Clinical Laboratory Sciences Data Transmission: The NPU Coding System. - Françoise Pontet; Ulla Magdal Petersen; Xavier Fuentes-Arderiu; Gunnar Nordin; Ivan Bruunshuus; Jarkko Ihalainen; Daniel Karlsson; Urban Forsum; René Dybkaer; Gunther Schadow; Wolf Kuelpmann; Georges Férard; et al. (MIE, 2009)

What can natural language processing do for clinical decision support? - Dina Demner-Fushman; Wendy Webber Chapman; Clement J. McDonald (J. Biomed. Informatics, 2009)

LOINC®: a universal catalogue of individual clinical observations and uniform representation of enumerated collections. - Daniel J. Vreeman; Clement J. McDonald; Stanley M. Huff (Int. J. Funct. Informatics Pers. Medicine, 2010)

Viewpoint paper: Improving newborn screening laboratory test ordering and result reporting using health information exchange. - Stephen M. Downs; Peter C. van Dyck; Piero Rinaldo; Clement J. McDonald; R. Rodrey Howell; Alan Zuckerman; Gregory J. Downing (J. Am. Medical Informatics Assoc., 2010)

An evaluation of medical knowledge contained in Wikipedia and its use in the LOINC database. - F. Jeff Friedlin; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2010)

The UMLS-CORE project: a study of the problem list terminologies used in large healthcare institutions. - Kin Wah Fung; Clement J. McDonald; Suresh Srinivasan (J. Am. Medical Informatics Assoc., 2010)

A Critical Window of Opportunity to Standardize Genetic Testing Results. - Swapna Abhyankar; Alan Zuckerman; Clement J. McDonald (AMIA, 2012)

Enhancing Clinical Research Data Interoperability: Consolidation of Common Data Elements for Neurologic Disorder Research. - Robert A. Jenders; Laritza Taft; Courtney Ashton; Stacie Grinnon; Yun Lu; Kristy Miller; Christina You; Joanne Odenkirchen; Petra Kaufman; Clement J. McDonald (AMIA, 2012)

Standardizing clinical laboratory data for secondary use. - Swapna Abhyankar; Dina Demner-Fushman; Clement J. McDonald (J. Biomed. Informatics, 2012)

Auditing consistency and usefulness of LOINC use among three large institutions - Using version spaces for grouping LOINC codes. - M. C. Lin; Daniel J. Vreeman; Clement J. McDonald; Stanley M. Huff (J. Biomed. Informatics, 2012)

Enabling international adoption of LOINC through translation. - Daniel J. Vreeman; Maria Teresa Chiaravalloti; John Hook; Clement J. McDonald (J. Biomed. Informatics, 2012)

Addressing some statistical challenges of using EHR data for clinical research. - Fiona M. Callaghan; Dina Demner-Fushman; Swapna Abhyankar; Matthew T. Jackson; Mallika Mundkur; Clement J. McDonald (AMIA, 2014)

De-identification of Address, Date, and Alphanumeric Identifiers in Narrative Clinical Reports. - Mehmet Kayaalp 002; Allen C. Browne; Zeyno A. Dodd; Pamela Sagan; Clement J. McDonald (AMIA, 2014)

A New Alternative for Accessing Medicare Claims Data: The Virtual Research Data Center. - Mallika Mundkur; Swapna Abhyankar; Alexandra Constantin; Leighton Chan; Clement J. McDonald (AMIA, 2014)

Visualization of Patient Prescription History Data in Emergency Care. - Selcuk Ozturk; Mehmet Kayaalp 002; Clement J. McDonald (AMIA, 2014)

Research and applications: Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis. - Swapna Abhyankar; Dina Demner-Fushman; Fiona M. Callaghan; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2014)

The pattern of name tokens in narrative clinical text and a comparison of five systems for redacting them. - Mehmet Kayaalp 002; Allen C. Browne; Fiona M. Callaghan; Zeyno A. Dodd; Guy Divita; Selcuk Ozturk; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2014)

Lung Segmentation in Chest Radiographs Using Anatomical Atlases With Nonrigid Registration. - Sema Candemir; Stefan Jaeger 001; Kannappan Palaniappan; Jonathan P. Musco; Rahul K. Singh; Zhiyun Xue; Alexandros Karargyris; Sameer K. Antani; George R. Thoma; Clement J. McDonald (IEEE Trans. Medical Imaging, 2014)

Automatic Tuberculosis Screening Using Chest Radiographs. - Stefan Jaeger 001; Alexandros Karargyris; Sema Candemir; Les R. Folio; Jenifer Siegelman; Fiona M. Callaghan; Zhiyun Xue; Kannappan Palaniappan; Rahul K. Singh; Sameer K. Antani; George R. Thoma; Yi-Xiang J. Wang; et al. (IEEE Trans. Medical Imaging, 2014)

An Easy-to-Use Clinical Text De-identification Tool for Clinical Scientists: NLM Scrubber. - Mehmet Kayaalp 002; Allen C. Browne; Zeyno A. Dodd; Pamela Sagan; Clement J. McDonald (AMIA, 2015)

Challenges and Insights in Using HIPAA Privacy Rule for Clinical Text Annotation. - Mehmet Kayaalp 002; Allen C. Browne; Pamela Sagan; Tyne McGee; Clement J. McDonald (AMIA, 2015)

Supporting interoperability of genetic data with LOINC. - Jamalynne Deckard; Clement J. McDonald; Daniel J. Vreeman (J. Am. Medical Informatics Assoc., 2015)

Report of the AMIA EHR-2020 Task Force on the status and future direction of EHRs. - Thomas H. Payne; Sarah Corley; Theresa A. Cullen; Tejal K. Gandhi; Linda Harrington; Gilad J. Kuperman; John E. Mattison; David McCallie; Clement J. McDonald; Paul C. Tang; William M. Tierney; Charlotte A. Weaver; et al. (J. Am. Medical Informatics Assoc., 2015)

Analysis of Healthcare Cost and Utilization in the First Two Years of the Medicare Shared Savings Program Using Big Data from the CMS Enclave. - Fabrício S. P. Kury; Seo H. Baik; Clement J. McDonald (AMIA, 2016)

LHC-Forms and Related Widgets for Capturing and Tuning Health Data. - Ye Wang; Paul Lynch; Ajay Kanduru; John Hook; Lee Mericle; Christophe Ludet; Daniel J. Vreeman; Clement J. McDonald (AMIA, 2016)

Preparing a collection of radiology examinations for distribution and retrieval. - Dina Demner-Fushman; Marc D. Kohli; Marc B. Rosenman; Sonya E. Shooshan; Laritza Rodriguez; Sameer K. Antani; George R. Thoma; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2016)

Enabling Interoperability between Healthcare Devices and EHR Systems. - Swapna Abhyankar; Paul Schluter; Kathryn Bennett; Daniel J. Vreeman; Clement J. McDonald (AMIA, 2017)

TNF-alpha Use as a Risk Factor for Lymphoma in Rheumatoid Arthritis Patients Using the Virtual Research Data Center. - Gregory T. Brown; Fabrício S. P. Kury; Clement J. McDonald (AMIA, 2017)

Cardioprotective Drugs and Incident Dementias in Medicare's Big Data. - Fabrício S. P. Kury; Seo H. Baik; Clement J. McDonald (AMIA, 2017)

The LOINC/RSNA Radiology Playbook: A unified terminology for radiology procedures. - Daniel J. Vreeman; Ken Wang; Chris Carr; Beverly Collins; Swapna Abhyankar; Jamalynne Deckard; Clement J. McDonald; Daniel L. Rubin; Curtis P. Langlotz (AMIA, 2017)

Response to Unit conversions between LOINC codes. - Daniel J. Vreeman; Swapna Abhyankar; Clement J. McDonald (J. Am. Medical Informatics Assoc., 2018)

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. - Xingmin Aaron Zhang; Amy Yates; Nicole A. Vasilevsky; Jean-Philippe F. Gourdine; Tiffany J. Callahan; Leigh C. Carmody; Daniel Danis; Marcin P. Joachimiak; Vida Ravanmehr; Emily R. Pfaff; James Champion; Kimberly Robasky; et al. (npj Digit. Medicine, 2019)

Informatics-izing the National Institutes of Health. - Clement J. McDonald; Patricia Flatley Brennan; Michael F. Chiang; Joshua Denny; Zhiyong Lu (AMIA, 2021)

The U.S. National Library of Medicine and standards for electronic health records: One thing led to another. - Clement J. McDonald; Betsy L. Humphreys (Inf. Serv. Use, 2022)

Mis-mappings between a producer's quantitative test codes and LOINC codes and an algorithm for correcting them. - Clement J. McDonald; Seo H. Baik; Zhaonian Zheng; Liz Amos; Xiaocheng Luan; Keith Marsolo; Laura G. Qualls (J. Am. Medical Informatics Assoc., 2023)