Dynamic Learning Agents and Enhanced Presence on the Grid. - Stefano A. Cerri; Marc Eisenstadt; Clément Jonquet (LeGE-WG 3, 2003)

Apprentissage issu de la communication pour des agents cognitifs. - Stefano A. Cerri; Clément Jonquet (Tech. Sci. Informatiques, 2003)

Learning Agents and Enhanced Presence for Generation of Services on the Grid. - Clément Jonquet; Marc Eisenstadt; Stefano A. Cerri (Towards the Learning Grid, 2005)

The Strobe Model: Dynamic Service Generation on the Grid. - Clément Jonquet; Stefano A. Cerri (Appl. Artif. Intell., 2005)

Intégration orientée service des modèles Grid et Multi-Agents. - Clément Jonquet; Pascal Dugenie; Stefano A. Cerri (JFSMA, 2006)

Agent-Grid Integration Ontology. - Frédéric Duvert; Clément Jonquet; Pascal Dugenie; Stefano A. Cerri (OTM Workshops (1), 2006)

Dynamic Service Generation: Agent interactions for service exchange on the Grid. (Génération dynamique de service : Interactions entre agents pour l'échange de service Grid). - Clément Jonquet (2006)

A System for Ontology-Based Annotation of Biomedical Data. - Clément Jonquet; Mark A. Musen; Nigam Shah (DILS, 2008)

The Principle of Immanence in GRID-Multiagent Integrated Systems. - Pascal Dugenie; Clément Jonquet; Stefano A. Cerri (OTM Workshops, 2008)

BioPortal: A Web Repository for Biomedical Ontologies and Data Resources. - Natalya Fridman Noy; Nigam Shah; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clément Jonquet; Michael Montegut; Daniel L. Rubin; Cherie Youn; Mark A. Musen (ISWC (Posters & Demos), 2008)

Service-Based Integration of Grid and Multi-Agent Systems Models. - Clément Jonquet; Pascal Dugenie; Stefano A. Cerri (SOCASE, 2008)

Les Agents comme des interpréteurs Scheme : Spécification dynamique par la communication - Clément Jonquet; Stefano A. Cerri (CoRR, 2008)

Agent-Grid Integration Language. - Clément Jonquet; Pascal Dugenie; Stefano A. Cerri (Multiagent Grid Syst., 2008)

What Four Million Mappings Can Tell You about Two Hundred Ontologies. - Amir Ghazvinian; Natalya Fridman Noy; Clément Jonquet; Nigam H. Shah; Mark A. Musen (ISWC, 2009)

Comparison of concept recognizers for building the Open Biomedical Annotator. - Nigam H. Shah; Nipun Bhatia; Clément Jonquet; Daniel L. Rubin; Annie P. Chiang; Mark A. Musen (BMC Bioinform., 2009)

Ontology-driven indexing of public datasets for translational bioinformatics. - Nigam H. Shah; Clément Jonquet; Annie P. Chiang; Atul J. Butte; Rong Chen 006; Mark A. Musen (BMC Bioinform., 2009)

BioPortal: ontologies and integrated data resources at the click of a mouse. - Natalya Fridman Noy; Nigam H. Shah; Patricia L. Whetzel; Benjamin Dai; Michael Dorf; Nicholas Griffith; Clément Jonquet; Daniel L. Rubin; Margaret-Anne D. Storey; Christopher G. Chute; Mark A. Musen (Nucleic Acids Res., 2009)

Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical. - Clément Jonquet; Adrien Coulet; Nigam H. Shah; Mark A. Musen (IC, 2010)

Optimize First, Buy Later: Analyzing Metrics to Ramp-Up Very Large Knowledge Bases. - Paea LePendu; Natalya Fridman Noy; Clément Jonquet; Paul R. Alexander; Nigam H. Shah; Mark A. Musen (ISWC (1), 2010)

A UIMA wrapper for the NCBO annotator. - Christophe Roeder; Clément Jonquet; Nigam H. Shah; William A. Baumgartner Jr.; Karin Verspoor; Lawrence Hunter (Bioinform., 2010)

Building a biomedical ontology recommender web service. - Clément Jonquet; Mark A. Musen; Nigam H. Shah (J. Biomed. Semant., 2010)

The NCBO Annotator: Ontology-Based Annotation as a Web Service. - Patricia L. Whetzel; Clément Jonquet; Cherie Youn; Michael Dorf; Ray W. Fergerson; Mark A. Musen; Nigam Shah (ICBO, 2011)

Negotiating the web science curriculum through shared educational artefacts. - Su White; Madalina Croitoru; Stéphane B. Bazan; Stefano A. Cerri; Hugh C. Davis; Raffaella Folgieri; Clément Jonquet; François Scharffe; Steffen Staab; Thanassis Tiropanis; Michalis Vafopoulos (WebSci, 2011)

NCBO Resource Index: Ontology-based search and mining of biomedical resources. - Clément Jonquet; Paea LePendu; Sean M. Falconer; Adrien Coulet; Natalya Fridman Noy; Mark A. Musen; Nigam H. Shah (J. Web Semant., 2011)

Construction et évolution de connaissances par confrontation de points de vue : prototype pour la recherche d'information scientifique. - Guillaume Surroca; Philippe Lemoisson; Clément Jonquet; Stefano A. Cerri (IC, 2014)

Integration of linguistic and web information to improve biomedical terminology extraction. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (IDEAS, 2014)

Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal ? - Julien Grosjean; Lina Fatima Soualmia; Khedidja Bouarech; Clément Jonquet; Stéfan Jacques Darmoni (IWBBIO, 2014)

An Approach to Compare Bio-Ontologies Portals. - Julien Grosjean; Lina Fatima Soualmia; Khedidja Bouarech; Clément Jonquet; Stéfan Jacques Darmoni (MIE, 2014)

BIOTEX: A system for Biomedical Terminology Extraction, Ranking, and Validation. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (ISWC (Posters & Demos), 2014)

SIFR Project: The Semantic Indexing of French Biomedical Data Resources. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (SIMBig, 2014)

Scoring Semantic Annotations Returned by The NCBO Annotator. - Soumia Melzi; Clément Jonquet (SWAT4LS, 2014)

Representing NCBO Annotator Results in Standard RDF with the Annotation Ontology. - Soumia Melzi; Clément Jonquet (SWAT4LS, 2014)

Yet Another Ranking Function for Automatic Multiword Term Extraction. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (PolTAL, 2014)

Automatic Term Extraction Combining Different Information (Extraction automatique de termes combinant différentes informations) [in French]. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (TALN (2), 2014)

Towards a Mixed Approach to Extract Biomedical Terms from Text Corpus. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (Int. J. Knowl. Discov. Bioinform., 2014)

Prédiction de la polysémie pour un terme biomédical. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (CORIA, 2015)

Roadmap for a Multilingual BioPortal. - Clément Jonquet; Vincent Emonet; Mark A. Musen (MSW@ESWC, 2015)

Diffusion de systèmes de préférence par confrontation de points de vue, vers une simulation de la Sérendipité. - Guillaume Surroca; Philippe Lemoisson; Clément Jonquet; Stefano A. Cerri (IC, 2015)

Preference Dissemination by Sharing Viewpoints. - Guillaume Surroca; Philippe Lemoisson; Clément Jonquet; Stefano A. Cerri (KEOD, 2015)

A Way to Automatically Enrich Biomedical Ontologies. - Juan Antonio Lossio-Ventura; Mathieu Roche; Clément Jonquet; Maguelonne Teisseire (EDBT, 2016)

Selection and Combination of Heterogeneous Mappings to Enhance Biomedical Ontology Matching. - Amina Annane; Zohra Bellahsene; Faiçal Azouaou; Clément Jonquet (EKAW, 2016)

Réconciliation d'alignements multi-lingues dans BioPortal. - Amina Annane; Vincent Emonet; Faiçal Azouaou; Clément Jonquet (IC, 2016)

Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. - Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo Kaboré; Vincent Emonet; John B. Graybeal; Mark A. Musen; Cyril Pommier; Pierre Larmande (ICBO/BioCreative, 2016)

Automatic Biomedical Term Polysemy Detection. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (LREC, 2016)

MuEVo, a Breast Cancer Consumer Health Vocabulary Built Out of Web Forums. - Solène Eholié; Mike Donald Tapi-Nzali; Sandra Bringay; Clément Jonquet (SWAT4LS, 2016)

Multilingual Mapping Reconciliation between English-French Biomedical Ontologies. - Amina Annane; Vincent Emonet; Faiçal Azouaou; Clément Jonquet (WIMS, 2016)

Subjective and generic distance in ViewpointS: an experiment on WordNet. - Guillaume Surroca; Philippe Lemoisson; Clément Jonquet; Stefano A. Cerri (WIMS, 2016)

Biomedical term extraction: overview and a new methodology. - Juan Antonio Lossio-Ventura; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (Inf. Retr. J., 2016)

ICD10 Coding of Death Certificates with the NCBO and SIFR Annotator(s) at CLEF eHealth 2017 Task 1. - Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Clément Jonquet (CLEF (Working Notes), 2017)

ViewpointS: When Social Ranking Meets the Semantic Web. - Philippe Lemoisson; Guillaume Surroca; Clément Jonquet; Stefano Alessandro Cerri (FLAIRS, 2017)

New Generation Metadata Vocabulary for Ontology Description and Publication. - Biswanath Dutta; Anne Toulet; Vincent Emonet; Clément Jonquet (MTSR, 2017)

YAM-BIO: results for OAEI 2017. - Amina Annane; Zohra Bellahsene; Faiçal Azouaou; Clément Jonquet (OM@ISWC, 2017)

Challenges for Ontology Repositories and Applications to Biomedicine & Agronomy. - Clément Jonquet (SIMBig, 2017)

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. - Marcos Martínez Romero; Clément Jonquet; Martin J. O'Connor; John B. Graybeal; Alejandro Pazos; Mark A. Musen (J. Biomed. Semant., 2017)

PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units. - Pierre Monnin; Clément Jonquet; Joël Legrand; Amedeo Napoli; Adrien Coulet (PeerJ Prepr., 2017)

Projet VisaTM : l'interconnexion OpenMinTeD - AgroPortal - ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français. - Fabienne Kettani; Stéphane Schneider; Sophie Aubin; Robert Bossy; Claire François; Clément Jonquet; Andon Tchechmedjiev; Anne Toulet; Claire Nédellec (IC, 2018)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+. - Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Soumia Melzi; Jitendra Jonnagaddala; Clément Jonquet (Bioinform., 2018)

SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes. - Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Stella Zevio; Clément Jonquet (BMC Bioinform., 2018)

AgroPortal: A vocabulary and ontology repository for agronomy. - Clément Jonquet; Anne Toulet; Elizabeth Arnaud; Sophie Aubin; Esther Dzalé Yeumo Kaboré; Vincent Emonet; John B. Graybeal; Marie-Angélique Laporte; Mark A. Musen; Valeria Pesce; Pierre Larmande (Comput. Electron. Agric., 2018)

ViewpointS: capturing formal data and informal contributions into an adaptive knowledge graph. - Philippe Lemoisson; Guillaume Surroca; Clément Jonquet; Stefano A. Cerri (Int. J. Knowl. Learn., 2018)

A novel framework for biomedical entity sense induction. - Juan Antonio Lossio-Ventura; Jiang Bian 001; Clément Jonquet; Mathieu Roche; Maguelonne Teisseire (J. Biomed. Informatics, 2018)

Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal. - Clément Jonquet; Anne Toulet; Biswanath Dutta; Vincent Emonet (J. Data Semant., 2018)

Building an effective and efficient background knowledge resource to enhance ontology matching. - Amina Annane; Zohra Bellahsene; Faiçal Azouaou; Clément Jonquet (J. Web Semant., 2018)

Ontology Repository and Ontology-Based Services - Challenges, contributions and applications to biomedicine & agronomy. (Portail d'ontologies et service à base d'ontologies - Défis, contributions et applications à la biomédecine et à l'agronomie). - Clément Jonquet (2019)

Recent progresses in data and knowledge integration for decision support in agri-food chains. - Sophie Aubin; Pierre Bisquert; Patrice Buche; Juliette Dibie; Liliana Ibanescu; Clément Jonquet; Catherine Roussey (IC, 2019)

PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison. - Pierre Monnin; Joël Legrand; Graziella Husson; Patrice Ringot; Andon Tchechmedjiev; Clément Jonquet; Amedeo Napoli; Adrien Coulet (BMC Bioinform., 2019)

Analysis of Term Reuse, Term Overlap and Extracted Mappings Across AgroPortal Semantic Resources. - Amir Laadhar; Élcio Abrahão; Clément Jonquet (EKAW, 2020)

Investigating One Million XRefs in Thirthy Ontologies from the OBO World. - Amir Laadhar; Élcio Abrahão; Clément Jonquet (ICBO/ODLS, 2020)

Semantic Description of Plant Phenological Development Stages, Starting with Grapevine. - Catherine Roussey; Xavier Delpuech; Florence Amardeilh; Stephan Bernard; Clément Jonquet (MTSR, 2020)

Results of the Ontology Alignment Evaluation Initiative 2020. - Mina Abd Nikooie Pour; Alsayed Algergawy; Reihaneh Amini; Daniel Faria; Irini Fundulaki; Ian Harrow; Sven Hertling; Ernesto Jiménez-Ruiz; Clément Jonquet; Naouel Karam; Abderrahmane Khiat; Amir Laadhar; et al. (OM@ISWC, 2020)

FAIRness Literacy: The Achilles' Heel of Applying FAIR Principles. - Romain David 001; Laurence Mabile; Alison Specht; Sarah Stryeck; Mogens Thomsen; Mohamed Yahia; Clément Jonquet; Laurent Dollé; Daniel Jacob; Daniele Bailo; Elena Bravo; Sophie Gachet; et al. (Data Sci. J., 2020)

39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. - Caterina Caracciolo; Sophie Aubin; Clément Jonquet; Emna Amdouni; Romain David 001; Leyla J. García; Brandon Whitehead; Catherine Roussey; Armando Stellato; Ferdinando Villa (Data Sci. J., 2020)

Une méthodologie et un outil d'évaluation du niveau de "FAIRness" pour les ressources sémantiques : le cas d'AgroPortal. - Emna Amdouni; Clément Jonquet (IC, 2021)

L'ontologie E-Phy, une base de connaissances pour le catalogue des produits phytopharmaceutiques autorisés en agriculture en France. - Syphax Bouazzouni; Clément Jonquet (IC, 2021)

Description sémantique des stades de développement phénologique des plantes cas d'étude de la vigne. - Catherine Roussey; Xavier Delpuech; Marc Raynal; Florence Amardheil; Stephan Bernard; Clément Jonquet (IC, 2021)

Crop Planning and Production Process Ontology (C3PO), a New Model to Assist Diversified Crop Production. - Baptiste Darnala; Florence Amardeilh; Catherine Roussey; Clément Jonquet (JOWO, 2021)

FAIR or FAIRer? An Integrated Quantitative FAIRness Assessment Grid for Semantic Resources and Ontologies. - Emna Amdouni; Clément Jonquet (MTSR, 2021)

French FastContext: A publicly accessible system for detecting negation, temporality and experiencer in French clinical notes. - Mehdi Mirzapour; Amine Abdaoui; Andon Tchechmedjiev; William Digan; Sandra Bringay; Clément Jonquet (J. Biomed. Informatics, 2021)

O'FAIRe: Ontology FAIRness Evaluator in the AgroPortal Semantic Resource Repository. - Emna Amdouni; Syphax Bouazzouni; Clément Jonquet (ESWC (Satellite Events), 2022)

Ontological Representation of Cultivated Plants: Linking Botanical and Agricultural Usages. - Baptiste Darnala; Florence Amardeilh; Catherine Roussey; Konstantin Todorov; Clément Jonquet (TEXT2KG/MK@ESWC, 2022)

O'FAIRe makes you an offer: metadata-based automatic FAIRness assessment for ontologies and semantic resources. - Emna Amdouni; Syphax Bouazzouni; Clément Jonquet (Int. J. Metadata Semant. Ontologies, 2022)

About versioning ontologies or any digital objects with clear semantics. - Clément Jonquet; María Poveda-Villalón (DaMaLOS, 2023)

Classification of Linking Problem Types for Linking Semantic Data. - Raphaël Conde Salazar; Clément Jonquet; Danai Symeonidou (SEMANTiCS, 2023)

Common Minimum Metadata for FAIR Semantic Artefacts. - Clément Jonquet; Biswanath Dutta; Luiz Olavo Bonino da Silva Santos; Robert Pergl; Yann Le Franc (Onto4FAIR, 2023)

IndustryPortal: a Common Repository for FAIR Ontologies in Industry 4.0. - Emna Amdouni; Arkopaul Sarkar; Clément Jonquet; Mohamed-Hedi Karray (ISWC (Posters/Demos/Industry), 2023)

Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology. - Clément Jonquet; John B. Graybeal; Syphax Bouazzouni; Michael Dorf; Nicola Fiore; Xeni Kechagioglou; Timothy Redmond; Ilaria Rosati; Alex Skrenchuk; Jennifer Vendetti; Mark A. Musen (ISWC, 2023)

A maturity model for catalogues of semantic artefacts. - Óscar Corcho; Fajar J. Ekaputra; Ivan Heibi; Clément Jonquet; András Micsik; Silvio Peroni; Emanuele Storti (CoRR, 2023)

Correction: 39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. - Caterina Caracciolo; Sophie Aubin; Clément Jonquet; Emna Amdouni; Romain David 001; Leyla J. García; Brandon Whitehead; Catherine Roussey; Armando Stellato; Ferdinando Villa (Data Sci. J., 2023)

C3PO: a crop planning and production process ontology and knowledge graph. - Baptiste Darnala; Florence Amardeilh; Catherine Roussey; Konstantin Todorov; Clément Jonquet (Frontiers Artif. Intell., 2023)

Catalogues of Semantic Artefacts - Maturity Dimensions and Sub-Criteria. - Óscar Corcho; Fajar J. Ekaputra; Ivan Heibi; Clément Jonquet; András Micsik; Silvio Peroni; Emanuele Storti (Zenodo, 2023)

Catalogues of Semantic Artefacts - Maturity Dimensions and Features. - Óscar Corcho; Fajar J. Ekaputra; Ivan Heibi; Clément Jonquet; András Micsik; Silvio Peroni; Emanuele Storti (Zenodo, 2023)

Catalogues of Semantic Artefacts - Maturity Dimensions and Features. - Óscar Corcho; Fajar J. Ekaputra; Ivan Heibi; Clément Jonquet; András Micsik; Silvio Peroni; Emanuele Storti (Zenodo, 2023)

C3PO : Une ontologie pour la planification de cultures et les processus de production agricole. - Baptiste Darnala; Florence Amardeilh; Catherine Roussey; Konstantin Todorov; Clément Jonquet (IC, 2024)

Ontology engineering and the FAIR principles: A gap analysis. - María Poveda-Villalón; Daniel Garijo; Alejandra N. González-Beltrán; Clément Jonquet; Yann Le Franc (JOWO, 2024)

Embrapa's contributions to integrate Brazilian Agricultural Vocabularies: Agrotermos in AgroPortal. - Milena Ambrosio Telles; Clément Jonquet; Bibiana Teixeira de Almeida; Jaudete Daltio; Celina Takemura; Leandro Oliveira; Maria de Cléofas Faggion Alencar (ONTOBRAS, 2024)

Catalogues of Semantic Artefacts - Maturity Dimensions and Features. - Óscar Corcho; Fajar J. Ekaputra; Ivan Heibi; Clément Jonquet; András Micsik; Silvio Peroni; Emanuele Storti (Zenodo, 2024)

Catalogues of Semantic Artefacts - Maturity Dimensions and Features. - Óscar Corcho; Fajar J. Ekaputra; Ivan Heibi; Clément Jonquet; András Micsik; Silvio Peroni; Emanuele Storti (Zenodo, 2024)

Catalogues of Semantic Artefacts - Maturity Dimensions and Features. - Óscar Corcho; Fajar J. Ekaputra; Ivan Heibi; Clément Jonquet; András Micsik; Silvio Peroni; Emanuele Storti (Zenodo, 2024)

BiodivPortal: Enabling Semantic Services for Biodiversity within the German National Research Data Infrastructure. - Naouel Karam; Jan Fillies; Clément Jonquet; Syphax Bouazzouni; Felicitas Löffler; Franziska Zander; Birgitta König-Ries; Anton Güntsch; Michael Diepenbroek; Adrian Paschke (Datenbank-Spektrum, 2024)

Federated FAIR Semantic Artefacts Discovery and Search with OntoPortal Federation. - Clément Jonquet; Syphax Bouazzouni; Guillaume Alviset; Nicola Fiore; Naouel Karam; Bilel Kihal; Christelle Pierkot; Martina Pulieri; Ilaria Rosati (ISWC (2), 2025)

OntoPortal-Astro, a semantic artefact catalogue for astronomy. - Baptiste Cecconi; Laura Debisschop; Sébastien Derriere; Mireille Louys; Carmen Corre; Nina Grau; Clément Jonquet (Astron. Comput., 2025)

MAEVa: A hybrid approach for matching agroecological experiment variables. - Oussama Mechhour; Sandrine Auzoux; Clément Jonquet; Mathieu Roche (Nat. Lang. Process. J., 2025)