Evaluating Feature Extraction Methods for Knowledge-based Biomedical Word Sense Disambiguation. - Sam Henry 001; Clint Cuffy; Bridget T. McInnes (BioNLP, 2017)

Vector representations of multi-word terms for semantic relatedness. - Sam Henry 001; Clint Cuffy; Bridget T. McInnes (J. Biomed. Informatics, 2018)

Measuring the quality of patient-physician communication. - Clint Cuffy; Nao Hagiwara; Scott Vrana; Bridget T. McInnes (J. Biomed. Informatics, 2020)

Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization. - Clint Cuffy; Evan French; Sophia Fehrmann; Bridget T. McInnes (WWW (Companion Volume), 2022)

Exploring a deep learning neural architecture for closed Literature-based discovery. - Clint Cuffy; Bridget T. McInnes (J. Biomed. Informatics, 2023)

Predicting implicit concept embeddings for singular relationship discovery replication of closed literature-based discovery. - Clint Cuffy; Bridget T. McInnes (Frontiers Res. Metrics Anal., 2025)