Statistical software for gene mapping by admixture linkage disequilibrium. - Giovanni Montana; Clive J. Hoggart (Briefings Bioinform., 2007)

Fregene: Simulation of realistic sequence-level data in populations and ascertained samples. - Marc Chadeau-Hyam; Clive J. Hoggart; Paul F. O'Reilly; John C. Whittaker; Maria De Iorio; David J. Balding (BMC Bioinform., 2008)

invertFREGENE: software for simulating inversions in population genetic data. - Paul F. O'Reilly; Lachlan J. M. Coin; Clive J. Hoggart (Bioinform., 2010)

npInv: accurate detection and genotyping of inversions using long read sub-alignment. - Haojing Shao; Devika Ganesamoorthy; Tania P. S. Duarte; Minh Duc Cao; Clive J. Hoggart; Lachlan J. M. Coin (BMC Bioinform., 2018)

Identification of disease-associated loci using machine learning for genotype and network data integration. - Luis G. Leal; Alessia David; Marjo-Riitta Järvelin; Sylvain Sebert; Minna Männikkö; Ville Karhunen; Eleanor Seaby; Clive J. Hoggart; Michael J. E. Sternberg (Bioinform., 2019)