StrainHub: a phylogenetic tool to construct pathogen transmission networks. - Adriano de Bernardi Schneider; Colby T. Ford; Reilly Hostager; John Williams; Michael Cioce; Ümit V. Çatalyürek; Joel O. Wertheim; Daniel Janies (Bioinform., 2020)

A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models. - Jia Wen; Colby T. Ford; Daniel Janies; Xinghua Shi (Bioinform., 2020)

Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria. - Colby T. Ford; Daniel Janies (F1000Research, 2020)

Human cytokine and coronavirus nucleocapsid protein interactivity using large-scale virtual screens. - Phillip J. Tomezsko; Colby T. Ford; Avery E. Meyer; Adam M. Michaleas; Rafael Jaimes (Frontiers Bioinform., 2024)

Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 and JN.1 with In Silico Protein Modeling and Docking. - Shirish Yasa; Sayal Guirales-Medrano; Denis Jacob Machado; Colby T. Ford; Daniel Janies (IEEE DataPort, 2024)