High-throughput sequence alignment using Graphics Processing Units. - Michael C. Schatz; Cole Trapnell; Arthur L. Delcher; Amitabh Varshney (BMC Bioinform., 2007)

TopHat: discovering splice junctions with RNA-Seq. - Cole Trapnell; Lior Pachter; Steven L. Salzberg (Bioinform., 2009)

Optimizing data intensive GPGPU computations for DNA sequence alignment. - Cole Trapnell; Michael C. Schatz (Parallel Comput., 2009)

Identification of novel transcripts in annotated genomes using RNA-Seq. - Adam Roberts; Harold Pimentel; Cole Trapnell; Lior Pachter (Bioinform., 2011)

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. - Michael P. Snyder; Shin Lin; Amanda Posgai; Mark Atkinson; Aviv Regev; Jennifer Rood; Orit Rozenblatt-Rosen; Leslie Gaffney; Anna Hupalowska; Rahul Satija; Nils Gehlenborg; Jay Shendure; et al. (Nat., 2019)