CLEP: a hybrid data- and knowledge-driven framework for generating patient representations. - Vinay Srinivas Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann 001; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández (Bioinform., 2021)

STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs. - Helena Balabin; Charles Tapley Hoyt; Colin Birkenbihl; Benjamin M. Gyori; John A. Bachman; Alpha Tom Kodamullil; Paul G. Plöger; Martin Hofmann-Apitius; Daniel Domingo-Fernández (Bioinform., 2022)

Integrative data semantics through a model-enabled data stewardship. - Philipp Wegner; Sebastian Schaaf; Mischa Uebachs; Daniel Domingo-Fernández; Yasamin Salimi; Stephan Gebel; Astghik Sargsyan; Colin Birkenbihl; Stephan Springstubbe; Thomas Klockgether; Juliane Fluck; Martin Hofmann-Apitius; et al. (Bioinform., 2022)

Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations. - Philipp Wendland; Colin Birkenbihl; Marc Gomez-Freixa; Meemansa Sood; Maik Kschischo; Holger Fröhlich (npj Digit. Medicine, 2022)

Towards enabling precision medicine in Alzheimer's disease and Parkinson's disease - Colin Birkenbihl (2024)

CLEP. - Vinay Srinivas Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann 001; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández (Zenodo, 2024)

CLEP. - Vinay Srinivas Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann 001; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández (Zenodo, 2024)

Design specifications for biomedical virtual twins in engineered adoptive cellular immunotherapies. - Ulrike Weirauch; Markus Kreuz; Colin Birkenbihl; Miriam Alb; Maria Quaranta; Laurence Calzone; Sophia Orozco-Ruiz; Stefanie Binder; Luise Fischer; Solène Clavreul; Morine Maguri; Maximilian Ferle; et al. (npj Digit. Medicine, 2025)

CLEP. - Vinay Srinivas Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann 001; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández (Zenodo, 2025)

Rethinking the residual approach: leveraging statistical learning to operationalize cognitive resilience in Alzheimer's disease. - Colin Birkenbihl; Madison Cuppels; Rory T. Boyle; Hannah M. Klinger; Oliver Langford; Gillian T. Coughlan; Michael J. Properzi; Jasmeer P. Chhatwal; Julie C. Price; Aaron P. Schultz; Dorene M. Rentz; Rebecca E. Amariglio; et al. (Brain Informatics, 2025)