Parallel performance of DES in ECB mode. - Ebru Celikel; Jean Davidson; Colin Kern (ISCN, 2006)

Improving Transmembrane Protein Prediction by Increasing the Utilization of Local Information. - Colin Kern; Li Liao; K. Vijay-Shanker (BICoB, 2011)

Improving interacting residue prediction using long-distance information in hidden Markov models. - Colin Kern; Alvaro J. González; Li Liao; K. Vijay-Shanker (BIBM, 2012)

Lattice models with asymmetric propensity matrices for locationally informed protein structure prediction. - Colin Kern; Li Liao (BIBM, 2013)

A post-decoding re-ranking algorithm for predicting interacting residues in proteins with hidden Markov models incorporating long-distance information. - Colin Kern; Li Liao (Comput. Biol. Chem., 2016)