Tools for the SBML Community. - Colin S. Gillespie; Darren J. Wilkinson; Carole J. Proctor; Daryl P. Shanley; Richard J. Boys; Thomas B. L. Kirkwood (Bioinform., 2006)

BASIS: an internet resource for network modelling. - Colin S. Gillespie; Darren J. Wilkinson; Daryl P. Shanley; Carole J. Proctor; Richard J. Boys; Thomas B. L. Kirkwood (J. Integr. Bioinform., 2006)

The SBML discrete stochastic models test suite. - Thomas W. Evans; Colin S. Gillespie; Darren J. Wilkinson (Bioinform., 2008)

CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models. - Yuhui Chen; Conor Lawless; Colin S. Gillespie; Jake Wu; Richard J. Boys; Darren J. Wilkinson (Briefings Bioinform., 2010)

Ten Simple Rules for Getting Help from Online Scientific Communities. - Giovanni Marco Dall'Olio; Jacopo Marino; Michael Schubert; Kevin L. Keys; Melanie I. Stefan; Colin S. Gillespie; Pierre Poulain; Khader Shameer; Robert Sugar; Brandon M. Invergo; Lars Juhl Jensen; Jaume Bertranpetit; et al. (PLoS Comput. Biol., 2011)

An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB. - Michael J. Bell; Colin S. Gillespie; Daniel Swan; Phillip W. Lord (Bioinform., 2012)

Moment closure based parameter inference of stochastic kinetic models. - Peter Milner; Colin S. Gillespie; Darren J. Wilkinson (Stat. Comput., 2013)

Scalable inference for Markov processes with intractable likelihoods. - Jamie Owen; Darren J. Wilkinson; Colin S. Gillespie (Stat. Comput., 2015)

Efficient R Programming - A Practical Guide to Smarter Programming. - Colin S. Gillespie; Robin Lovelace (O'Reilly, 2016)

Correlated pseudo-marginal schemes for time-discretised stochastic kinetic models. - Andrew Golightly; Emma Bradley; Tom E. Lowe; Colin S. Gillespie (Comput. Stat. Data Anal., 2019)

Efficient construction of Bayes optimal designs for stochastic process models. - Colin S. Gillespie; Richard J. Boys (Stat. Comput., 2019)

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1. - Lucian P. Smith; Stuart L. Moodie; Frank T. Bergmann; Colin S. Gillespie; Sarah M. Keating; Matthias König 003; Chris J. Myers; Maciek J. Swat; Darren J. Wilkinson; Michael Hucka (J. Integr. Bioinform., 2020)