A Graph-Based Similarity Approach to Classify Recurrent Complex Motifs from Their Context in RNA Structures. - Coline Gianfrotta; Vladimir Reinharz; Dominique Barth; Alain Denise (SEA, 2021)

Modélisation, analyse et classification de motifs structuraux d'ARN à partir de leur contexte, par des méthodes d'algorithmique de graphes. (Modeling, analysis and classification of RNA structural motifs from their context, using graph algorithmic methods). - Coline Gianfrotta (2022)

mineMS2: annotation of spectral libraries with exact fragmentation patterns. - Alexis Delabrière; Coline Gianfrotta; Sylvain Dechaumet; Annelaure Damont; Thaïs Hautbergue; Pierrick Roger; Emilien L. Jamin; Olivier Puel; Christophe Junot; François Fenaille; Etienne A. Thévenot (J. Cheminformatics, 2025)