The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. - Laure Guillou; Dipankar Bachar; Stéphane Audic; David Bass; Cédric Berney; Lucie Bittner; Christophe Boutte; Gaétan Burgaud; Colomban de Vargas; Johan Decelle; Javier del Campo; John R. Dolan; et al. (Nucleic Acids Res., 2013)

Swarm v3: towards tera-scale amplicon clustering. - Frédéric Mahé; Lucas Czech; Alexandros Stamatakis; Christopher Quince; Colomban de Vargas; Micah Dunthorn; Torbjørn Rognes (Bioinform., 2021)

The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. - Caroline Vernette; Julien Lecubin; Pablo Sánchez; Silvia G. Acinas; Marcel Babin; Peer Bork; Emmanuel Boss; Chris Bowler; Guy Cochrane; Colomban de Vargas; Gabriel Gorsky; Lionel Guidi; et al. (Nucleic Acids Res., 2022)