MASH: an interactive program for multiple alignment and consensus sequence construction for biological sequences. - Colombe Chappey; A. Danckaert; Philippe Dessen; Serge A. Hazout (Comput. Appl. Biosci., 1991)

'Size leap' algorithm: an efficient extraction of the longest common motifs from a molecular sequence set. Application to the DNA sequence reconstruction. - A. Danckaert; Colombe Chappey; Serge A. Hazout (Comput. Appl. Biosci., 1991)

A method for delineating structurally homogeneous regions in protein sequences. - Colombe Chappey; Serge A. Hazout (Comput. Appl. Biosci., 1992)

MMDB: Entrez's 3D structure database. - Aron Marchler-Bauer; Kenneth J. Addess; Colombe Chappey; Lewis Y. Geer; Thomas Madej; Yo Matsuo; Yanli Wang; Stephen H. Bryant (Nucleic Acids Res., 1999)

Database resources of the National Center for Biotechnology Information. - David L. Wheeler; Colombe Chappey; Alex E. Lash; Detlef D. Leipe; Thomas L. Madden; Gregory D. Schuler; Tatiana A. Tatusova; Barbara A. Rapp (Nucleic Acids Res., 2000)

A web-based genotyping resource for viral sequences. - Mikhail Rozanov; Uwe Plikat; Colombe Chappey; Andrey Kochergin; Tatiana A. Tatusova (Nucleic Acids Res., 2004)

An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1. - Sergei L. Kosakovsky Pond; David Posada; Eric W. Stawiski; Colombe Chappey; Art F. Y. Poon; Gareth Hughes; Esther Fearnhill; Mike B. Gravenor; Andrew J. Leigh Brown; Simon D. W. Frost (PLoS Comput. Biol., 2009)

Evolution of Recombination on an HIV-1 Derived Fitness Landscape. - João Martins; Roger D. Kouyos; Trevor Hinkley; Colombe Chappey; Mojgan Haddad; Jeannette M. Whitcomb; Christos J. Petropoulos; Sebastian Bonhoeffer (ALIFE, 2010)