Promoter recognition based on the maximum entropy hidden Markov model. - Xiao-yu Zhao; Jin Zhang; Yuan-yuan Chen; Qiang Li; Tao Yang; Cong Pian; Liang-Yun Zhang (Comput. Biol. Medicine, 2014)

OP-Triplet-ELM: Identification of real and pseudo microRNA precursors using extreme learning machine with optimal features. - Cong Pian; Jin Zhang; Yuan-yuan Chen; Zhi Chen; Qin Li; Qiang Li; Liang-Yun Zhang (J. Bioinform. Comput. Biol., 2016)

V-ELMpiRNAPred: Identification of human piRNAs by the voting-based extreme learning machine (V-ELM) with a new hybrid feature. - Cong Pian; Yuan-yuan Chen; Jin Zhang; Zhi Chen; Guang-Le Zhang; Qiang Li; Tao Yang; Liang-Yun Zhang (J. Bioinform. Comput. Biol., 2017)

LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs. - Cong Pian; Guang-Le Zhang; Tengfei Tu; Xiangyu Ma; Fei Li (Database J. Biol. Databases Curation, 2019)

miR+Pathway: the integration and visualization of miRNA and KEGG pathways. - Cong Pian; Guang-Le Zhang; Libin Gao; Xiaodan Fan; Fei Li (Briefings Bioinform., 2020)

MM-6mAPred: identifying DNA N6-methyladenine sites based on Markov model. - Cong Pian; Guang-Le Zhang; Fei Li; Xiaodan Fan (Bioinform., 2020)

SOMM4mC: a second-order Markov model for DNA N4-methylcytosine site prediction in six species. - Jiali Yang; Kun Lang; Guang-Le Zhang; Xiaodan Fan; Yuanyuan Chen; Cong Pian (Bioinform., 2020)

Mining influential genes based on deep learning. - Lingpeng Kong; Yuanyuan Chen; Fengjiao Xu; Mingmin Xu; Zutan Li; Jingya Fang; Liangyun Zhang; Cong Pian (BMC Bioinform., 2021)

Deep6mA: A deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species. - Zutan Li; Hangjin Jiang; Lingpeng Kong; Yuanyuan Chen; Kun Lang; Xiaodan Fan; Liangyun Zhang; Cong Pian (PLoS Comput. Biol., 2021)

Adapt-Kcr: a novel deep learning framework for accurate prediction of lysine crotonylation sites based on learning embedding features and attention architecture. - Zutan Li; Jingya Fang; Shining Wang; Liangyun Zhang; Yuanyuan Chen; Cong Pian (Briefings Bioinform., 2022)

MiRLoc: predicting miRNA subcellular localization by incorporating miRNA-mRNA interactions and mRNA subcellular localization. - Mingmin Xu; Yuanyuan Chen; Zhihui Xu; Liangyun Zhang; Hangjin Jiang; Cong Pian (Briefings Bioinform., 2022)

PlantBind: an attention-based multi-label neural network for predicting plant transcription factor binding sites. - Wenkai Yan; Zutan Li; Cong Pian; Yufeng Wu (Briefings Bioinform., 2022)

Predicting the structure of unexplored novel fentanyl analogues by deep learning model. - Yuan Zhang; Qiaoyan Jiang; Ling Li; Zutan Li; Zhihui Xu; Yuanyuan Chen; Yang Sun; Cheng Liu; Zhengsheng Mao; Feng Chen; Hualan Li; Yue Cao; et al. (Briefings Bioinform., 2022)

NcPath: a novel platform for visualization and enrichment analysis of human non-coding RNA and KEGG signaling pathways. - Zutan Li; Yuan Zhang; Jingya Fang; Zhihui Xu; Hao Zhang; Minfang Mao; Yuanyuan Chen; Liangyun Zhang; Cong Pian (Bioinform., 2023)

MMG4: Recognition of G4-Forming Sequences Based on Markov Model. - Boyuan Yu; Hao Zhang; Cong Pian; Yuanyuan Chen (J. Comput. Biol., 2024)