A hybrid protein-protein interaction triple extraction method for biomedical literature. - Zhehuan Zhao; Zhihao Yang; Cong Sun 004; Lei Wang 085; Hongfei Lin (BIBM, 2017)

Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature. - Cong Sun 004; Zhihao Yang; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021; Liang Yang 003; Kan Xu; Yijia Zhang 001 (BIBM, 2018)

Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task. - Cong Sun 004; Zhihao Yang (BioNLP-OST@EMNLP-IJNCLP, 2019)

A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature. - Cong Sun 004; Zhihao Yang; Ling Luo 001; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (IEEE Access, 2019)

Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method. - Cong Sun 004; Zhihao Yang; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021; Liang Yang 003; Kan Xu; Yijia Zhang 001 (Int. J. Data Min. Bioinform., 2019)

Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge. - Cong Sun 004; Zhihao Yang; Leilei Su; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (Bioinform., 2020)

Attention guided capsule networks for chemical-protein interaction extraction. - Cong Sun 004; Zhihao Yang; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (J. Biomed. Informatics, 2020)

Deep learning with language models improves named entity recognition for PharmaCoNER. - Cong Sun 004; Zhihao Yang; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (BMC Bioinform., 2021)

Biomedical named entity recognition using BERT in the machine reading comprehension framework. - Cong Sun 004; Zhihao Yang; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (J. Biomed. Informatics, 2021)

MRC4BioER: Joint extraction of biomedical entities and relations in the machine reading comprehension framework. - Cong Sun 004; Zhihao Yang; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (J. Biomed. Informatics, 2022)

Identification of Offensive Language in Social Media Using Prompt Learning. - Leilei Su; Zezheng Wang; Yifan Peng 002; Cong Sun 004 (ICHI, 2023)

A Literature Review and Framework for Human Evaluation of Generative Large Language Models in Healthcare. - Thomas Yu Chow Tam; Sonish Sivarajkumar; Sumit Kapoor; Alisa V. Stolyar; Katelyn Polanska; Karleigh R. McCarthy; Hunter Osterhoudt; Xizhi Wu; Shyam Visweswaran; Sunyang Fu; Piyush Mathur; Giovanni E. Cacciamani; et al. (CoRR, 2024)

Deep learning with noisy labels in medical prediction problems: a scoping review. - Yishu Wei; Yu Deng; Cong Sun 004; Mingquan Lin; Hongmei Jiang; Yifan Peng 002 (J. Am. Medical Informatics Assoc., 2024)

Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension. - Leilei Su; Jian Chen; Yifan Peng 002; Cong Sun 004 (J. Biomed. Informatics, 2024)

A framework for human evaluation of large language models in healthcare derived from literature review. - Thomas Yu Chow Tam; Sonish Sivarajkumar; Sumit Kapoor; Alisa V. Stolyar; Katelyn Polanska; Karleigh R. McCarthy; Hunter Osterhoudt; Xizhi Wu; Shyam Visweswaran; Sunyang Fu; Piyush Mathur; Giovanni E. Cacciamani; et al. (npj Digit. Medicine, 2024)

A multimodal approach for few-shot biomedical named entity recognition in low-resource languages. - Jian Chen; Leilei Su; Yihong Li; Mingquan Lin; Yifan Peng 002; Cong Sun 004 (J. Biomed. Informatics, 2025)

Generative Large Language Models Trained for Detecting Errors in Radiology Reports. - Cong Sun 004; Kurt Teichman; Yiliang Zhou; Brian Critelli; David Nauheim; Graham Keir; Xindi Wang; Judy Zhong; Adam E. Flanders; George Shih; Yifan Peng 002 (CoRR, 2025)

Extracting Post-Acute Sequelae of SARS-CoV-2 Infection Symptoms from Clinical Notes via Hybrid Natural Language Processing. - Zilong Bai; Zihan Xu; Cong Sun 004; Chengxi Zang; H. Timothy Bunnell; Catherine Sinfield; Jacqueline R. M. A. Maasch; Aaron Thomas Martinez; L. Charles Bailey; Mark G. Weiner; Thomas R. Campion Jr.; Thomas Carton; et al. (CoRR, 2025)