ProsperousPlus: a one-stop and comprehensive platform for accurate protease-specific substrate cleavage prediction and machine-learning model construction. - Fuyi Li; Cong Wang 044; Xudong Guo; Tatsuya Akutsu; Geoffrey I. Webb; Lachlan J. M. Coin; Lukasz A. Kurgan; Jiangning Song (Briefings Bioinform., 2023)

MetalPrognosis: A Biological Language Model-Based Approach for Disease-Associated Mutations in Metal-Binding Site Prediction. - Runchang Jia; Zhijie He; Cong Wang 044; Xudong Guo; Fuyi Li (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

PLANNER: A Multi-Scale Deep Language Model for the Origins of Replication Site Prediction. - Cong Wang 044; Zhijie He; Runchang Jia; Shirui Pan; Lachlan J. M. Coin; Jiangning Song; Fuyi Li (IEEE J. Biomed. Health Informatics, 2024)

Characterizing Secretion System Effector Proteins With Structure-Aware Graph Neural Networks and Pre-Trained Language Models. - Zixu Ran; Cong Wang 044; Heyun Sun; Shirui Pan; Fuyi Li (IEEE J. Biomed. Health Informatics, 2024)