The MidasPlus molecular modeling system. - Thomas E. Ferrin; Conrad C. Huang; Gregory S. Couch; Eric F. Pettersen; Robert Langridge (CHI, 1992)

Chimera: Affordable Desktop Molecular Modeling on Linux Workstations. - David E. Konerding; Conrad C. Huang; Thomas E. Ferrin (Annual Linux Showcase & Conference, 2001)

ViewFeature: Integrated Feature Analysis and Visualization. - D. Rey Banatao; Conrad C. Huang; Patricia C. Babbitt; Russ B. Altman; Teri E. Klein (Pacific Symposium on Biocomputing, 2001)

SNP Analysis and Presentation in the Pharmacogenetics of Membrane Transporters Project. - Doug Stryke; Conrad C. Huang; Michiko Kawamoto; Susan J. Johns; Elaine J. Carlson; Joseph A. Deyoung; Maya K. Leabman; Ira Herskowitz; Kathleen M. Giacomini; Thomas E. Ferrin (Pacific Symposium on Biocomputing, 2003)

MINRMS: an efficient algorithm for determining protein structure similarity using root-mean-squared-distance. - Andrew I. Jewett; Conrad C. Huang; Thomas E. Ferrin (Bioinform., 2003)

The Structure Superposition Database. - Ranyee A. Chiang; Elaine C. Meng; Conrad C. Huang; Thomas E. Ferrin; Patricia C. Babbitt (Nucleic Acids Res., 2003)

BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. - Doug Stryke; Michiko Kawamoto; Conrad C. Huang; Susan J. Johns; Leslie A. King; Courtney A. Harper; Elaine C. Meng; Roy E. Lee; Alice Yee; Larry L'Italien; Pao-Tien Chuang; Stephen G. Young; et al. (Nucleic Acids Res., 2003)

UCSF Chimera - A visualization system for exploratory research and analysis. - Eric F. Pettersen; Thomas D. Goddard; Conrad C. Huang; Gregory S. Couch; Daniel M. Greenblatt; Elaine C. Meng; Thomas E. Ferrin (J. Comput. Chem., 2004)

MODBASE, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Narayanan Eswar; Hannes Braberg; Mallur S. Madhusudhan; Fred P. Davis; Ashley C. Stuart; Nebojsa Mirkovic; Andrea Rossi 005; Marc A. Martí-Renom; András Fiser; Ben M. Webb; Daniel M. Greenblatt; et al. (Nucleic Acids Res., 2004)

Enhancing Data Sharing in Collaborative Research Projects with DASH. - Thomas E. Ferrin; Conrad C. Huang; Daniel M. Greenblatt; Doug Stryke; Kathleen M. Giacomini; John H. Morris (Pacific Symposium on Biocomputing, 2005)

Representing Structure-Function Relationships in Mechanistically Diverse Enzyme Superfamilies. - Scott C.-H. Pegg; Shoshana D. Brown; Sunil Ojha; Conrad C. Huang; Thomas E. Ferrin; Patricia C. Babbitt (Pacific Symposium on Biocomputing, 2005)

Tools for integrated sequence-structure analysis with UCSF Chimera. - Elaine C. Meng; Eric F. Pettersen; Gregory S. Couch; Conrad C. Huang; Thomas E. Ferrin (BMC Bioinform., 2006)

The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. - Alex S. Nord; Patricia J. Chang; Bruce R. Conklin; Antony V. Cox; Courtney A. Harper; Geoffrey G. Hicks; Conrad C. Huang; Susan J. Johns; Michiko Kawamoto; Songyan Liu; Elaine C. Meng; John H. Morris; et al. (Nucleic Acids Res., 2006)

structureViz: linking Cytoscape and UCSF Chimera. - John H. Morris; Conrad C. Huang; Patricia C. Babbitt; Thomas E. Ferrin (Bioinform., 2007)

ModBase, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Benjamin M. Webb; David T. Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C. Meng; Eric F. Pettersen; Conrad C. Huang; Ruchira S. Datta; Parthasarathy Sampathkumar; et al. (Nucleic Acids Res., 2011)

The Structure-Function Linkage Database. - Eyal Akiva; Shoshana D. Brown; Daniel E. Almonacid; Alan E. Barber II; Ashley F. Custer; Michael A. Hicks 002; Conrad C. Huang; Florian Lauck; Susan T. Mashiyama; Elaine C. Meng; David Mischel; John H. Morris; et al. (Nucleic Acids Res., 2014)

Enhancing UCSF Chimera through web services. - Conrad C. Huang; Elaine C. Meng; John H. Morris; Eric F. Pettersen; Thomas E. Ferrin (Nucleic Acids Res., 2014)

RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps. - Jonathan E. Chen; Conrad C. Huang; Thomas E. Ferrin (Bioinform., 2015)

Biocuration in the structure-function linkage database: the anatomy of a superfamily. - Gemma L. Holliday; Shoshana D. Brown; Eyal Akiva; David Mischel; Michael A. Hicks 002; John H. Morris; Conrad C. Huang; Elaine C. Meng; Scott C.-H. Pegg; Thomas E. Ferrin; Patricia C. Babbitt (Database J. Biol. Databases Curation, 2017)

The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information. - John H. Morris; Karthik Soman; Rabia E. Akbas; Xiaoyuan Zhou; Brett Smith; Elaine C. Meng; Conrad C. Huang; Gabriel Cerono; Gundolf Schenk; Angela Rizk-Jackson; Adil Harroud; Lauren M. Sanders; et al. (Bioinform., 2023)