Optimizing syntax patterns for discovering protein-protein interactions. - Conrad Plake; Jörg Hakenberg; Ulf Leser (SAC, 2005)

Systematic feature evaluation for gene name recognition. - Jörg Hakenberg; Steffen Bickel; Conrad Plake; Ulf Brefeld; Hagen Zahn; Lukas Faulstich; Ulf Leser; Tobias Scheffer (BMC Bioinform., 2005)

ALIBABA: PubMed as a graph. - Conrad Plake; Torsten Schiemann; Marcus Pankalla; Jörg Hakenberg; Ulf Leser (Bioinform., 2006)

GoPubMed: Exploring Pubmed with Ontological Background Knowledge. - Heiko Dietze; Dimitra Alexopoulou; Michael R. Alvers; Bill Barrio-Alvers; Andreas Doms; Jörg Hakenberg; Jan Mönnich; Conrad Plake; Andreas Reischuck; Loïc Royer; Thomas Wächter; Matthias Zschunke; et al. (Ontologies and Text Mining for Life Sciences, 2008)

Inter-species normalization of gene mentions with GNAT. - Jörg Hakenberg; Conrad Plake; Robert Leaman; Michael Schroeder 001; Graciela Gonzalez 001 (ECCB, 2008)

Mutation tagging with gene identifiers applied to membrane protein stability prediction. - Rainer Winnenburg; Conrad Plake; Michael Schroeder 001 (AIMM, 2008)

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? - Rainer Winnenburg; Thomas Wächter; Conrad Plake; Andreas Doms; Michael Schroeder 001 (Briefings Bioinform., 2008)

Identifying Hot Cancer and Novel Novel Cell-cycle Genes from Literature. - Loïc Royer; Conrad Plake; Michael Schroeder 001 (GCB, 2009)

Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. - Rainer Winnenburg; Conrad Plake; Michael Schroeder 001 (BMC Bioinform., 2009)

GoGene: gene annotation in the fast lane. - Conrad Plake; Loïc Royer; Rainer Winnenburg; Jörg Hakenberg; Michael Schroeder 001 (Nucleic Acids Res., 2009)

The GNAT library for local and remote gene mention normalization. - Jörg Hakenberg; Martin Gerner; Maximilian Haeussler; Illés Solt; Conrad Plake; Michael Schroeder 001; Graciela Gonzalez 001; Goran Nenadic; Casey M. Bergman (Bioinform., 2011)