Electronic Polymerase Chain Reaction (EPCR) Search Algorithm. - Conrad Shyu; James A. Foster; Larry J. Forney (CSB, 2002)

MiCA: Web-Based Computational Tools for the Analysis of Microbial Community Structure and Compisition Based on T-RFLP of 16S rRNA Gene. - Conrad Shyu; James A. Foster; K. X. Liao; S. J. Bent; K. Sale; Larry J. Forney; Terence Soule (CSB, 2002)

Evolving Consensus Sequence for Multiple Sequence Alignment with a Genetic Algorithm. - Conrad Shyu; James A. Foster (GECCO, 2003)

Multiple Sequence Alignment with Evolutionary Computation. - Conrad Shyu; Luke Sheneman; James A. Foster (Genet. Program. Evolvable Mach., 2004)

Reducing the bias and uncertainty of free energy estimates by using regression to fit thermodynamic integration data. - Conrad Shyu; F. Marty Ytreberg (J. Comput. Chem., 2009)

Accurate estimation of solvation free energy using polynomial fitting techniques. - Conrad Shyu; F. Marty Ytreberg (J. Comput. Chem., 2011)

"METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive". - Mariam Quiñones; David Liou; Conrad Shyu; Wongyu Kim; Ivan Vujkovic-Cvijin; Yasmine Belkaid; Darrell E. Hurt (BMC Bioinform., 2020)