girafe - an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. - Joern Toedling; Constance Ciaudo; Olivier Voinnet; Edith Heard; Emmanuel Barillot (Bioinform., 2010)

ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. - Chong-Jian Chen; Nicolas Servant; Joern Toedling; Alexis Sarazin; Antonin Marchais; Evelyne Duvernois-Berthet; Valérie Cognat; Vincent Colot; Olivier Voinnet; Edith Heard; Constance Ciaudo; Emmanuel Barillot (Bioinform., 2012)

Comparative analysis of differential gene expression tools for RNA sequencing time course data. - Daniel Spies; Peter F. Renz; Tobias A. Beyer; Constance Ciaudo (Briefings Bioinform., 2019)