Sequence Database Search Using Jumping Alignments. - Constantin Bannert; Marc Rehmsmeier; Rainer Spang; Jens Stoye (German Conference on Bioinformatics, 2001)

Evaluation of the Jumping Alignment algorithm with artificial and biological data. - Constantin Bannert; Jens Stoye (German Conference on Bioinformatics, 2003)

Protein Annotation by Secondary Structure Based Alignments (PASSTA). - Constantin Bannert; Jens Stoye (CompLife, 2005)

BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation. - Constantin Bannert; A. Welfle; C. aus dem Spring; Dietmar Schomburg (BMC Bioinform., 2010)