Solving Large Multicut Problems for Connectomics via Domain Decomposition. - Constantin Pape; Thorsten Beier; Peter Li; Viren Jain; Davi D. Bock; Anna Kreshuk (ICCV Workshops, 2017)

The Mutex Watershed: Efficient, Parameter-Free Image Partitioning. - Steffen Wolf 001; Constantin Pape; Alberto Bailoni; Nasim Rahaman; Anna Kreshuk; Ullrich Köthe; Fred A. Hamprecht (ECCV (4), 2018)

Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. - Larissa Heinrich; Jan Funke; Constantin Pape; Juan Nunez-Iglesias; Stephan Saalfeld (MICCAI (2), 2018)

Synthetic Patches, Real Images: Screening for Centrosome Aberrations in EM Images of Human Cancer Cells. - Artem Lukoyanov; Isabella Haberbosch; Constantin Pape; Alwin Krämer; Yannick Schwab; Anna Kreshuk (MICCAI (1), 2019)

The Mutex Watershed and its Objective: Efficient, Parameter-Free Image Partitioning. - Steffen Wolf 001; Alberto Bailoni; Constantin Pape; Nasim Rahaman; Anna Kreshuk; Ullrich Köthe; Fred A. Hamprecht (CoRR, 2019)

Leveraging Domain Knowledge to improve EM image segmentation with Lifted Multicuts. - Constantin Pape; Alex Matskevych; Julian Hennies; Anna Kreshuk (CoRR, 2019)

A Generalized Framework for Agglomerative Clustering of Signed Graphs applied to Instance Segmentation. - Alberto Bailoni; Constantin Pape; Steffen Wolf 001; Thorsten Beier; Anna Kreshuk; Fred A. Hamprecht (CoRR, 2019)

Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts. - Constantin Pape; Alex Matskevych; Adrian Wolny; Julian Hennies; Giulia Mizzon; Marion Louveaux; Jacob Musser; Alexis Maizel; Detlev Arendt; Anna Kreshuk (Frontiers Comput. Sci., 2019)

Proposal-Free Volumetric Instance Segmentation from Latent Single-Instance Masks. - Alberto Bailoni; Constantin Pape; Steffen Wolf 001; Anna Kreshuk; Fred A. Hamprecht (GCPR, 2020)

The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation. - Steffen Wolf 001; Yuyan Li; Constantin Pape; Alberto Bailoni; Anna Kreshuk; Fred A. Hamprecht (ECCV (6), 2020)

Stateless actor-critic for instance segmentation with high-level priors. - Paul Hilt; Edgar Kaziakhmedov; Sourabh Bhide; Maria Leptin; Constantin Pape; Anna Kreshuk (CoRR, 2021)

The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning. - Steffen Wolf 001; Alberto Bailoni; Constantin Pape; Nasim Rahaman; Anna Kreshuk; Ullrich Köthe; Fred A. Hamprecht (IEEE Trans. Pattern Anal. Mach. Intell., 2021)

Scalable Instance Segmentation for Microscopy - Constantin Pape (2021)

GASP, a generalized framework for agglomerative clustering of signed graphs and its application to Instance Segmentation. - Alberto Bailoni; Constantin Pape; Nathan Hütsch; Steffen Wolf 001; Thorsten Beier; Anna Kreshuk; Fred A. Hamprecht (CVPR, 2022)

Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. - Adrian Wolny; Qin Yu 005; Constantin Pape; Anna Kreshuk (CVPR, 2022)

From Shallow to Deep: Exploiting Feature-Based Classifiers for Domain Adaptation in Semantic Segmentation. - Alex Matskevych; Adrian Wolny; Constantin Pape; Anna Kreshuk (Frontiers Comput. Sci., 2022)

Reinforcement learning for instance segmentation with high-level priors. - Paul Hilt; Maedeh Zarvandi; Edgar Kaziakhmedov; Sourabh Bhide; Maria Leptin; Constantin Pape; Anna Kreshuk (ICCV (Workshops), 2023)

Probabilistic Domain Adaptation for Biomedical Image Segmentation. - Anwai Archit; Constantin Pape (CoRR, 2023)

Current Progress and Challenges in Large-Scale 3D Mitochondria Instance Segmentation. - Daniel Franco-Barranco; Zudi Lin; Won-Dong Jang; Xueying Wang 002; Qijia Shen; Wenjie Yin; Yutian Fan; Mingxing Li 003; Chang Chen; Zhiwei Xiong; Rui Xin 003; Hao Liu; et al. (IEEE Trans. Medical Imaging, 2023)

ViM-UNet: Vision Mamba for Biomedical Segmentation. - Anwai Archit; Constantin Pape (CoRR, 2024)

MedicoSAM: Towards foundation models for medical image segmentation. - Anwai Archit; Luca Freckmann; Constantin Pape (CoRR, 2025)

Segment Anything for Histopathology. - Titus Griebel; Anwai Archit; Constantin Pape (CoRR, 2025)

Parameter Efficient Fine-Tuning of Segment Anything Model. - Carolin Teuber; Anwai Archit; Constantin Pape (CoRR, 2025)

Tiling artifacts and trade-offs of feature normalization in the segmentation of large biological images. - Elena Buglakova; Anwai Archit; Edoardo D'Imprima; Julia Mahamid; Constantin Pape; Anna Kreshuk (CoRR, 2025)