A neuro-oncology workstation for structuring, modeling, and visualizing patient records. - William Hsu; Corey W. Arnold; Ricky K. Taira (IHI, 2010)

Robust Skull Stripping of Clinical Glioblastoma Multiforme Data. - William Speier; Juan Eugenio Iglesias; Leila El-Kara; Zhuowen Tu; Corey W. Arnold (MICCAI (3), 2011)

A topic model of clinical reports. - Corey W. Arnold; William Speier (SIGIR, 2012)

BabySTEPS: A Sugar Tracking Electronic Portal System for Gestational Diabetes. - Corey W. Arnold; Tina Nguyen; Carla Janzen (MedInfo, 2013)

Integrating UIMA Annotators in a Web-based Text Processing Framework. - Xiang Chen; Corey W. Arnold (MedInfo, 2013)

Unifying Acute Stroke Treatment Guidelines for a Bayesian Belief Network. - Alexa Love; Corey W. Arnold; Suzie El-Saden; David S. Liebeskind; Lewellyn P. Andrada; Jeffrey L. Saver; Alex A. T. Bui (MedInfo, 2013)

Hierarchical Semantic Structures for Medical NLP. - Ricky K. Taira; Corey W. Arnold (MedInfo, 2013)

Research and applications: Imaging informatics for consumer health: towards a radiology patient portal. - Corey W. Arnold; Mary McNamara; Suzie El-Saden; Shawn Chen; Ricky K. Taira; Alex A. T. Bui (J. Am. Medical Informatics Assoc., 2013)

Perspective: Imaging-based observational databases for clinical problem solving: the role of informatics. - Alex A. T. Bui; William Hsu; Corey W. Arnold; Suzie El-Saden; Denise R. Aberle; Ricky K. Taira (J. Am. Medical Informatics Assoc., 2013)

Predicting Discharge Mortality after Acute Ischemic Stroke Using Balanced Data. - King Chung Ho; William Speier; Suzie El-Saden; David S. Liebeskind; Jeffrey L. Saver; Alex A. T. Bui; Corey W. Arnold (AMIA, 2014)

Data Model for Personalized Patient Health Guidelines: An Exploratory Study. - Mary McNamara; Karthik Sarma; Denise R. Aberle; Alex A. T. Bui; Corey W. Arnold (AMIA, 2014)

Patient portal preferences: Perspectives on imaging information. - Mary McNamara; Corey W. Arnold; Karthik Sarma; Denise R. Aberle; Edward B. Garon; Alex A. T. Bui (J. Assoc. Inf. Sci. Technol., 2015)

A temporal deep learning approach for MR perfusion parameter estimation in stroke. - King Chung Ho; Fabien Scalzo; Karthik V. Sarma; Suzie El-Saden; Corey W. Arnold (ICPR, 2016)

Evaluating topic model interpretability from a primary care physician perspective. - Corey W. Arnold; Andrea Oh; Shawn Chen; William Speier (Comput. Methods Programs Biomed., 2016)

A data-driven approach for quality assessment of radiologic interpretations. - William Hsu; Simon X. Han; Corey W. Arnold; Alex A. T. Bui; Dieter R. Enzmann (J. Am. Medical Informatics Assoc., 2016)

Using phrases and document metadata to improve topic modeling of clinical reports. - William Speier; Michael K. Ong; Corey W. Arnold (J. Biomed. Informatics, 2016)

Classifying Acute Ischemic Stroke Onset Time using Deep Imaging Features. - King Chung Ho; William Speier; Suzie M. El-Saden; Corey W. Arnold (AMIA, 2017)

A Multi-scale U-Net for Semantic Segmentation of Histological Images from Radical Prostatectomies. - Jiayun Li; Karthik V. Sarma; King Chung Ho; Arkadiusz Gertych; Beatrice S. Knudsen; Corey W. Arnold (AMIA, 2017)

Source-LDA: Enhancing Probabilistic Topic Models Using Prior Knowledge Sources. - Justin Wood; Patrick Tan; Wei Wang 010; Corey W. Arnold (ICDE, 2017)

Predicting Patient Health Status using Activity Tracker Data. - Yiwen Meng; William Speier; Eldin Dzubur; Brennan M. R. Spiegel; Corey W. Arnold (AMIA, 2018)

Estimating Health-related Quality of Life of Twitter Users: Methods for Semantic Processing of Social Media Posts. - Karthik V. Sarma; Brennan M. R. Spiegel; W. Mark Reid; Xiang S. Chen; Raina M. Merchant; Emily Seltzer; Corey W. Arnold (AMIA, 2018)

Semantic segmentation for prostate cancer grading by convolutional neural networks. - Nathan Ing; Zhaoxuan Ma; Jiayun Li; Hootan Salemi; Corey W. Arnold; Beatrice S. Knudsen; Arkadiusz Gertych (Digital Pathology, 2018)

An EM-based semi-supervised deep learning approach for semantic segmentation of histopathological images from radical prostatectomies. - Jiayun Li; William Speier; King Chung Ho; Karthik V. Sarma; Arkadiusz Gertych; Beatrice S. Knudsen; Corey W. Arnold (Comput. Medical Imaging Graph., 2018)

Semi-supervised Rare Disease Detection Using Generative Adversarial Network. - Wenyuan Li 001; Yunlong Wang 001; Yong Cai 001; Corey W. Arnold; Emily Zhao; Yilian Yuan (CoRR, 2018)

Evaluating utility and compliance in a patient-based eHealth study using continuous-time heart rate and activity trackers. - William Speier; Eldin Dzubur; Mary Zide; Chrisandra Shufelt; Sandy Joung; Jennifer E. Van Eyk; C. Noel Bairey Merz; Mayra Lopez; Brennan Spiegel; Corey W. Arnold (J. Am. Medical Informatics Assoc., 2018)

Semi-supervised learning based on generative adversarial network: a comparison between good GAN and bad GAN approach. - Wenyuan Li 001; Zichen Wang; Jiayun Li; Jennifer Polson; William Speier; Corey W. Arnold (CVPR Workshops, 2019)

A Self-Paced P300 speller with Improved Typing Speed using continuous stimulus Presentations. - William Speier; Corey W. Arnold; Nand Chandravadia; Dustin Roberts; Shrita Pendekanti; Andrew Marttini; Nader Pouratian (GBCIC, 2019)

Estimating the Health-Related Quality of Life of Twitter Users Using Semantic Processing. - Karthik V. Sarma; Brennan M. R. Spiegel; W. Mark Reid; Shawn Chen; Raina M. Merchant; Emily Seltzer; Corey W. Arnold (MedInfo, 2019)

LSTM Network for Prediction of Hemorrhagic Transformation in Acute Stroke. - Yannan Yu; Bhargav Parsi; William Speier; Corey W. Arnold; Min Lou; Fabien Scalzo (MICCAI (4), 2019)

An attention-based multi-resolution model for prostate whole slide imageclassification and localization. - Jiayun Li; Wenyuan Li 001; Arkadiusz Gertych; Beatrice S. Knudsen; William Speier; Corey W. Arnold (CoRR, 2019)

A protocol integrating remote patient monitoring patient reported outcomes and cardiovascular biomarkers. - Chrisandra Shufelt; Eldin Dzubur; Sandy Joung; Garth Fuller; Kelly N. Mouapi; Irene Van Den Broek; Mayra Lopez; Shivani Dhawan; Corey W. Arnold; William Speier; Mitra Mastali; Qin Fu; et al. (npj Digit. Medicine, 2019)

A Machine Learning Approach for Classifying Ischemic Stroke Onset Time From Imaging. - King Chung Ho; William Speier; Haoyue Zhang; Fabien Scalzo; Suzie El-Saden; Corey W. Arnold (IEEE Trans. Medical Imaging, 2019)

Path R-CNN for Prostate Cancer Diagnosis and Gleason Grading of Histological Images. - Wenyuan Li 001; Jiayun Li; Karthik V. Sarma; King Chung Ho; Shiwen Shen; Beatrice S. Knudsen; Arkadiusz Gertych; Corey W. Arnold (IEEE Trans. Medical Imaging, 2019)

Optimizing P300 speller performance using language models for character and word prediction. - Nithin Parthasarathy; Corey W. Arnold; Nader Pouratian; William Speier (BIBE, 2020)

Maintaining High Accuracy General P300 Speller Using the Language Modeling and Dynamic Stopping. - James Soetedjo; Osita Sean Keluo-Udeke; Corey W. Arnold; Nader Pouratian; William Speier (BIBE, 2020)

Classifying Breast Histopathology Images with a Ductal Instance-Oriented Pipeline. - Beibin Li; Ezgi Mercan; Sachin Mehta; Stevan Knezevich; Corey W. Arnold; Donald L. Weaver; Joann G. Elmore; Linda G. Shapiro (ICPR, 2020)

Toward heterogeneous information fusion: bipartite graph convolutional networks for in silico drug repurposing. - Zichen Wang; Mu Zhou; Corey W. Arnold (Bioinform., 2020)

Attention-Guided Discriminative Region Localization for Bone Age Assessment. - Chao Chen 026; Zhihong Chen; Xinyu Jin; Lanjuan Li; William Speier; Corey W. Arnold (CoRR, 2020)

Bidirectional Representation Learning from Transformers using Multimodal Electronic Health Record Data for Chronic to Predict Depression. - Yiwen Meng; William Speier; Michael K. Ong; Corey W. Arnold (CoRR, 2020)

Semi-supervised learning using adversarial training with good and bad samples. - Wenyuan Li 001; Zichen Wang; Yuguang Yue; Jiayun Li; William Speier; Mingyuan Zhou; Corey W. Arnold (Mach. Vis. Appl., 2020)

A Machine Learning Approach to Classifying Self-Reported Health Status in a Cohort of Patients With Heart Disease Using Activity Tracker Data. - Yiwen Meng; William Speier; Chrisandra Shufelt; Sandy Joung; Jennifer E. Van Eyk; C. Noel Bairey Merz; Mayra Lopez; Brennan Spiegel; Corey W. Arnold (IEEE J. Biomed. Health Informatics, 2020)

A Machine Learning Approach to Predict Acute Ischemic Stroke Thrombectomy Reperfusion using Discriminative MR Image Features. - Haoyue Zhang; Jennifer Polson; Kambiz Nael; Noriko Salamon; Bryan Yoo; William Speier; Corey W. Arnold (BHI, 2021)

Automatic Estimation of Limbal Stem Cell Densities in Cultured Epithelial Cell Microscopy Imaging. - Nathan Siu; Maxime Ruiz; Sheyla Gonzalez Garrido; Yu Yan; Dylan Steinecke; Elizabeth Rao; Rachel Choi; Sarah Robertson; Sophie Deng; Corey W. Arnold; William Speier (BIBE, 2021)

A Semi-Supervised Learning Framework to Leverage Proxy Information for Stroke MRI Analysis. - Jennifer Polson; Haoyue Zhang; Kambiz Nael; Noriko Salamon; Bryan Yoo; Namkug Kim; Dong-Wha Kang; William Speier; Corey W. Arnold (EMBC, 2021)

The Biased Coin Flip Process for Nonparametric Topic Modeling. - Justin Wood; Wei Wang 010; Corey W. Arnold (ICDAR (2), 2021)

Hierarchical Graph Pathomic Network for Progression Free Survival Prediction. - Zichen Wang; Jiayun Li; Zhufeng Pan; Wenyuan Li 001; Anthony E. Sisk; Huihui Ye; William Speier; Corey W. Arnold (MICCAI (8), 2021)

A multi-resolution model for histopathology image classification and localization with multiple instance learning. - Jiayun Li; Wenyuan Li 001; Anthony E. Sisk; Huihui Ye; W. Dean Wallace; William Speier; Corey W. Arnold (Comput. Biol. Medicine, 2021)

Intra-domain task-adaptive transfer learning to determine acute ischemic stroke onset time. - Haoyue Zhang; Jennifer S. Polson; Kambiz Nael; Noriko Salamon; Bryan Yoo; Suzie El-Saden; Fabien Scalzo; William Speier; Corey W. Arnold (Comput. Medical Imaging Graph., 2021)

Federated learning improves site performance in multicenter deep learning without data sharing. - Karthik V. Sarma; Stephanie A. Harmon; Thomas Sanford; Holger R. Roth; Ziyue Xu 001; Jesse Tetreault; Daguang Xu; Mona G. Flores; Alex G. Raman; Rushikesh Kulkarni; Bradford J. Wood; Peter L. Choyke; et al. (J. Am. Medical Informatics Assoc., 2021)

HCET: Hierarchical Clinical Embedding With Topic Modeling on Electronic Health Records for Predicting Future Depression. - Yiwen Meng; William Speier; Michael K. Ong; Corey W. Arnold (IEEE J. Biomed. Health Informatics, 2021)

Bidirectional Representation Learning From Transformers Using Multimodal Electronic Health Record Data to Predict Depression. - Yiwen Meng; William Speier; Michael K. Ong; Corey W. Arnold (IEEE J. Biomed. Health Informatics, 2021)

MobileNetV2 Based Diagnosis and Grading of Limbal Stem Cell Deficiency. - Patrick Liu; Saarang Panchavati; Mara Pleasure; Nathan Siu; Clemence Bonnet; Sophie Deng; Corey W. Arnold; William Speier (BIBE, 2022)

A Bayesian Topic Model for Human-Evaluated Interpretability. - Justin Wood; Corey W. Arnold; Wei Wang 010 (LREC, 2022)

Transformer Lesion Tracker. - Wen Tang; Han Kang; Haoyue Zhang; Pengxin Yu; Corey W. Arnold; Rongguo Zhang (MICCAI (6), 2022)

RPLHR-CT Dataset and Transformer Baseline for Volumetric Super-Resolution from CT Scans. - Pengxin Yu; Haoyue Zhang; Han Kang; Wen Tang; Corey W. Arnold; Rongguo Zhang (MICCAI (6), 2022)

Attention-Guided Prostate Lesion Localization and Grade Group Classification with Multiple Instance Learning. - Ekaterina Redekop; Karthik V. Sarma; Adam Kinnaird; Anthony Sisk; Steven S. Raman; Leonard S. Marks; William Speier; Corey W. Arnold (MIDL, 2022)

Graph Convolutional Networks for Multi-modality Medical Imaging: Methods, Architectures, and Clinical Applications. - Kexin Ding; Mu Zhou; Zichen Wang; Qiao Liu 008; Corey W. Arnold; Shaoting Zhang 001; Dimitris N. Metaxas (CoRR, 2022)

Federated Learning with Research Prototypes for Multi-Center MRI-based Detection of Prostate Cancer with Diverse Histopathology. - Abhejit Rajagopal; Ekaterina Redekop; Anil Kemisetti; Rushi Kulkarni; Steven S. Raman; Kirti Magudia; Corey W. Arnold; Peder E. Z. Larson (CoRR, 2022)

Knowledge Source Rankings for Semi-Supervised Topic Modeling. - Justin Wood; Corey W. Arnold; Wei Wang 010 (Inf., 2022)

Medicine in the Monthly Review: Revealing public medical discourse with topic modelling. - Whitney Arnold; Corey W. Arnold (Digit. Scholarsh. Humanit., 2022)

High resolution histopathology image generation and segmentation through adversarial training. - Wenyuan Li 001; Jiayun Li; Jennifer Polson; Zichen Wang; William Speier; Corey W. Arnold (Medical Image Anal., 2022)

Attention-Guided Discriminative Region Localization and Label Distribution Learning for Bone Age Assessment. - Chao Chen 026; Zhihong Chen; Xinyu Jin; Lanjuan Li; William Speier; Corey W. Arnold (IEEE J. Biomed. Health Informatics, 2022)

PathAL: An Active Learning Framework for Histopathology Image Analysis. - Wenyuan Li 001; Jiayun Li; Zichen Wang; Jennifer Polson; Anthony E. Sisk; Dipti P. Sajed; William Speier; Corey W. Arnold (IEEE Trans. Medical Imaging, 2022)

Pretrained Transformers for Seizure Detection. - Saarang Panchavati; Samuel Vander Dussen; Hemal Semwal; Ahmed Ali; Justin Chen; Haoran Li; Corey W. Arnold; William Speier (ICASSP, 2023)

Pathology-Based Ischemic Stroke Etiology Classification via Clot Composition Guided Multiple Instance Learning. - Mara Pleasure; Ekaterina Redekop; Jennifer S. Polson; Haoyue Zhang; Naoki Kaneko; William Speier; Corey W. Arnold (ICCV (Workshops), 2023)

Deep Learning for Tumor-Associated Stroma Identification in Prostate Histopathology Slides. - Zichen Wang; Mara Pleasure; Haoyue Zhang; Kimberly Flores; Anthony Sisk; William Speier; Corey W. Arnold (MICCAI (6), 2023)

Predicting Thrombectomy Recanalization from CT Imaging Using Deep Learning Models. - Haoyue Zhang; Jennifer S. Polson; Eric J. Yang; Kambiz Nael; William Speier; Corey W. Arnold (CoRR, 2023)

Multi-site, Multi-domain Airway Tree Modeling (ATM'22): A Public Benchmark for Pulmonary Airway Segmentation. - Minghui Zhang; Yangqian Wu; Hanxiao Zhang; Yulei Qin; Hao Zheng 008; Wen Tang; Corey W. Arnold; Chenhao Pei; Pengxin Yu; Yang Nan 002; Guang Yang 006; Simon Walsh; et al. (CoRR, 2023)

Ultrasound Image Enhancement using CycleGAN and Perceptual Loss. - Shreeram Athreya; Ashwath Radhachandran; Vedrana Ivezic; Vivek Sant; Corey W. Arnold; William Speier (CoRR, 2023)

Synthesizing MR Image Contrast Enhancement Using 3D High-Resolution ConvNets. - Chao Chen 026; Catalina Raymond; William Speier; Xinyu Jin; Timothy F. Cloughesy; Dieter R. Enzmann; Benjamin M. Ellingson; Corey W. Arnold (IEEE Trans. Biomed. Eng., 2023)

Multi-site, Multi-domain Airway Tree Modeling. - Minghui Zhang; Yangqian Wu; Hanxiao Zhang; Yulei Qin; Hao Zheng 008; Wen Tang; Corey W. Arnold; Chenhao Pei; Pengxin Yu; Yang Nan 002; Guang Yang 006; Simon Walsh; et al. (Medical Image Anal., 2023)

Codebook VQ-VAE Approach for Prostate Cancer Diagnosis using Multiparametric MRI. - Ekaterina Redekop; Mara Pleasure; Zichen Wang; Karthik V. Sarma; Adam Kinnaird; William Speier; Corey W. Arnold (CVPR Workshops, 2024)

ThyGraph: A Graph-Based Approach for Thyroid Nodule Diagnosis from Ultrasound Studies. - Ashwath Radhachandran; Alekhya Vittalam; Vedrana Ivezic; Vivek Sant; Shreeram Athreya; Chace Moleta; Maitraya Patel; Rinat Masamed; Corey W. Arnold; William Speier (MICCAI (4), 2024)

High Performance P300 Spellers Using GPT2 Word Prediction With Cross-Subject Training. - Nithin Parthasarathy; James Soetedjo; Saarang Panchavati; Nitya Parthasarathy; Corey W. Arnold; Nader Pouratian; William Speier (CoRR, 2024)

Digital Volumetric Biopsy Cores Improve Gleason Grading of Prostate Cancer Using Deep Learning. - Ekaterina Redekop; Mara Pleasure; Zichen Wang; Anthony Sisk; Yang Zong; Kimberly Flores; William Speier; Corey W. Arnold (CoRR, 2024)

Reducing Overtreatment of Indeterminate Thyroid Nodules Using a Multimodal Deep Learning Model. - Shreeram Athreya; Andrew Melehy; Sujit Silas Armstrong Suthahar; Vedrana Ivezic; Ashwath Radhachandran; Vivek Sant; Chace Moleta; Henry Zheng; Maitraya Patel; Rinat Masamed; Corey W. Arnold; William Speier (CoRR, 2024)

Evaluation Of P300 Speller Performance Using Large Language Models Along With Cross-Subject Training. - Nithin Parthasarathy; James Soetedjo; Saarang Panchavati; Nitya Parthasarathy; Corey W. Arnold; Nader Pouratian; William Speier (CoRR, 2024)

Spatial resolution enhancement using deep learning improves chest disease diagnosis based on thick slice CT. - Pengxin Yu; Haoyue Zhang; Dawei Wang; Rongguo Zhang; Mei Deng; Haoyu Yang; Lijun Wu; Xiaoxu Liu; Andrea Oh; Fereidoun Abtin; Ashley Prosper; Kathleen Ruchalski; et al. (npj Digit. Medicine, 2024)

A multitask approach for automated detection and segmentation of thyroid nodules in ultrasound images. - Ashwath Radhachandran; Adam Kinzel; Joseph Chen; Vivek Sant; Maitraya Patel; Rinat Masamed; Corey W. Arnold; William Speier (Comput. Biol. Medicine, 2024)

CytoFM: The first cytology foundation model. - Vedrana Ivezic; Ashwath Radhachandran; Ekaterina Redekop; Shreeram Athreya; Dongwoo Lee; Vivek Sant; Corey W. Arnold; William Speier (CVPR Workshops, 2025)

Prototype-Guided Diffusion for Digital Pathology: Achieving Foundation Model Performance with Minimal Clinical Data. - Ekaterina Redekop; Mara Pleasure; Vedrana Ivezic; Zichen Wang; Kimberly Flores; Anthony Sisk; William Speier; Corey W. Arnold (CVPR Workshops, 2025)

Increasing adherence and collecting symptom-specific biometric signals in remote monitoring of heart failure patients: a randomized controlled trial. - Sukanya Mohapatra; Mirna Issa; Vedrana Ivezic; Rose Doherty; Leonard S. Marks; Esther Lan; Shawn Chen; Keith Rozett; Lauren Cullen; Wren Reynolds; Rose Rocchio; Gregg C. Fonarow; et al. (J. Am. Medical Informatics Assoc., 2025)

Zero-shot Medical Event Prediction Using a Generative Pre-trained Transformer on Electronic Health Records. - Ekaterina Redekop; Zichen Wang; Rushikesh Kulkarni; Mara Pleasure; Aaron Chin; Hamid Reza Hassanzadeh; Brian L. Hill; Melika Emami; William Speier; Corey W. Arnold (CoRR, 2025)

DSA-NRP: No-Reflow Prediction from Angiographic Perfusion Dynamics in Stroke EVT. - Shreeram Athreya; Carlos Olivares; Ameera Ismail; Kambiz Nael; William Speier; Corey W. Arnold (CoRR, 2025)

STACT-Time: Spatio-Temporal Cross Attention for Cine Thyroid Ultrasound Time Series Classification. - Irsyad Adam; Tengyue Zhang; Steven S. Raman; Zhuyu Qiu; Brandon Taraku; Hexiang Feng; Sile Wang; Ashwath Radhachandran; Shreeram Athreya; Vedrana Ivezic; Peipei Ping; Corey W. Arnold; et al. (CoRR, 2025)

SPADE: Spatial Transcriptomics and Pathology Alignment Using a Mixture of Data Experts for an Expressive Latent Space. - Ekaterina Redekop; Mara Pleasure; Zichen Wang; Kimberly Flores; Anthony Sisk; William Speier; Corey W. Arnold (CoRR, 2025)