Large-scale directional relationship extraction and resolution. - Cory B. Giles; Jonathan D. Wren (BMC Bioinform., 2008)

Predicting gene ontology from a global meta-analysis of 1-color microarray experiments. - Mikhail G. Dozmorov; Cory B. Giles; Jonathan D. Wren (BMC Bioinform., 2011)

GenomeRunner: automating genome exploration. - Mikhail G. Dozmorov; Lukas R. Cara; Cory B. Giles; Jonathan D. Wren (Bioinform., 2012)

Systematic classification of non-coding RNAs by epigenomic similarity. - Mikhail G. Dozmorov; Cory B. Giles; Kristi A. Koelsch; Jonathan D. Wren (BMC Bioinform., 2013)

mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis. - Cory B. Giles; Reshmi Girijadevi; Mikhail G. Dozmorov; Jonathan D. Wren (BMC Bioinform., 2013)

Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data. - Mikhail G. Dozmorov; Indra Adrianto; Cory B. Giles; Edmund R. Glass; Stuart B. Glenn; Courtney Montgomery; Kathy L. Sivils; Lorin E. Olson; Tomoaki Iwayama; Willard M. Freeman; Christopher J. Lessard; Jonathan D. Wren (BMC Bioinform., 2015)

GenomeRunner web server: regulatory similarity and differences define the functional impact of SNP sets. - Mikhail G. Dozmorov; Lukas R. Cara; Cory B. Giles; Jonathan D. Wren (Bioinform., 2016)

ALE: automated label extraction from GEO metadata. - Cory B. Giles; Chase A. Brown; Michael Ripperger; Zane Dennis; Xiavan Roopnarinesingh; Hunter Porter; Aleksandra Perz; Jonathan D. Wren (BMC Bioinform., 2017)

MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations. - Aleksandra Perz; Cory B. Giles; Chase A. Brown; Hunter Porter; Xiavan Roopnarinesingh; Jonathan D. Wren (BMC Bioinform., 2019)

BioVDB: biological vector database for high-throughput gene expression meta-analysis. - Michal J. Winnicki; Chase A. Brown; Hunter Porter; Cory B. Giles; Jonathan D. Wren (Frontiers Artif. Intell., 2024)