Gene Regulatory Network Properties Linked to Gene Expression Dynamics in Spatially Extended Systems. - Costas Bouyioukos; Jan T. Kim (ECAL (1), 2009)

Analysis tools for the interplay between genome layout and regulation. - Costas Bouyioukos; Mohamed Elati; François Képès (BMC Bioinform., 2016)

GREAT: a web portal for Genome Regulatory Architecture Tools. - Costas Bouyioukos; François Bucchini; Mohamed Elati; François Képès (Nucleic Acids Res., 2016)

Prot2Text: Multimodal Protein's Function Generation with GNNs and Transformers. - Hadi Abdine; Michail Chatzianastasis; Costas Bouyioukos; Michalis Vazirgiannis (AAAI, 2024)