Multi-scale application of the N3 method for intensity correction of MR images. - Craig K. Jones; Erick Wong (Image Processing, 2002)

Convex geometry for rapid tissue classification in MRI. - Erick Wong; Craig K. Jones (Image Processing, 2002)

Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. - Bennett A. Landman; Jonathan A. D. Farrell; Craig K. Jones; Seth A. Smith; Jerry L. Prince; Susumu Mori (NeuroImage, 2007)

Multiparametric magnetic resonance imaging analysis of the corticospinal tract in multiple sclerosis. - Daniel S. Reich; Seth A. Smith; Kathleen M. Zackowski; Eliza M. Gordon-Lipkin; Craig K. Jones; Jonathan A. D. Farrell; Susumu Mori; Peter C. M. van Zijl; Peter A. Calabresi (NeuroImage, 2007)

Mapping magnetic susceptibility anisotropies of white matter in vivo in the human brain at 7 T. - Xu Li 003; Deepti S. Vikram; Issel Anne L. Lim; Craig K. Jones; Jonathan A. D. Farrell; Peter C. M. van Zijl (NeuroImage, 2012)

Nuclear Overhauser enhancement (NOE) imaging in the human brain at 7 T. - Craig K. Jones; Alan J. Huang; Jiadi Xu; Richard A. E. Edden; Michael Schär; Jun Hua; Nikita Oskolkov; Domenico Zacà; Jinyuan Zhou; Michael T. McMahon; Jay J. Pillai; Peter C. M. van Zijl (NeuroImage, 2013)

Quantitative magnetic susceptibility mapping without phase unwrapping using WASSR. - Issel Anne L. Lim; Xu Li 003; Craig K. Jones; Jonathan A. D. Farrell; Deepti S. Vikram; Peter C. M. van Zijl (NeuroImage, 2014)

Demonstration of Brain Tumor-Induced Neurovascular Uncoupling in Resting-State fMRI at Ultrahigh Field. - Shruti Agarwal; Haris I. Sair; Raag D. Airan; Jun Hua; Craig K. Jones; Hye-Young Heo; Alessandro Olivi; Martin A. Lindquist; James J. Pekar; Jay J. Pillai (Brain Connect., 2016)

Data-driven detection and registration of spine surgery instrumentation in intraoperative images. - Sophia A. Doerr; Ali Uneri; Yixuan Huang; Craig K. Jones; Xiaoxuan Zhang; Michael D. Ketcha; Patrick A. Helm; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2020)

Multi-slot intraoperative imaging and 3D-2D registration for evaluation of long surgical constructs in spine surgery. - Ali Uneri; Xiaoxuan Zhang; Michael D. Ketcha; Sophia A. Doerr; Craig K. Jones; Patrick A. Helm; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2020)

Multi-slot extended view imaging on the O-Arm: image quality and application to intraoperative assessment of spinal morphology. - Xiaoxuan Zhang; Ali Uneri; Pengwei Wu; Michael D. Ketcha; Sophia A. Doerr; Craig K. Jones; Patrick A. Helm; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2020)

Deformable MR-CT image registration using an unsupervised synthesis and registration network for neuro-endoscopic surgery. - Runze Han; Craig K. Jones; Michael D. Ketcha; Pengwei Wu; Prasad Vagdargi; Ali Uneri; Junghoon Lee; Mark G. Luciano; William S. Anderson; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2021)

Data-driven deformable 3D-2D registration for guiding neuroelectrode placement in deep brain stimulation. - Ali Uneri; Pengwei Wu; Craig K. Jones; Michael D. Ketcha; Prasad Vagdargi; Runze Han; Patrick A. Helm; Mark G. Luciano; William S. Anderson; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2021)

Robot-assisted ventriculoscopic 3D reconstruction for guidance of deep-brain stimulation surgery. - Prasad Vagdargi; Ali Uneri; Craig K. Jones; Pengwei Wu; Runze Han; Mark G. Luciano; William S. Anderson; Gregory D. Hager; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2021)

Deep Labeling of fMRI Brain Networks Using Cloud Based Processing. - Sejal Ghate; Alberto Santamaría-Pang; Ivan Tarapov; Haris I. Sair; Craig K. Jones (ISVC (1), 2022)

Deformable registration of MRI to intraoperative cone-beam CT of the brain using a joint synthesis and registration network. - Runze Han; Craig K. Jones; Pengwei Wu; Prasad Vagdargi; Xiaoxuan Zhang; Ali Uneri; Junghoon Lee; Mark G. Luciano; William S. Anderson; Patrick A. Helm; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2022)

Automatic labeling of vertebrae in long-length intraoperative imaging with a multi-view, region-based CNN. - Yixuan Huang; Craig K. Jones; Xiaoxuan Zhang; Ashley Johnston; Nafi Aygun; Timothy Witham; Patrick A. Helm; Jeffrey H. Siewerdsen; Ali Uneri (Image-Guided Procedures, 2022)

Robot-assisted neuroendoscopy for real-time 3D guidance of transventricular approach to deep-brain targets. - Prasad Vagdargi; Ali Uneri; Craig K. Jones; Pengwei Wu; Runze Han; Mark G. Luciano; William S. Anderson; Patrick A. Helm; Gregory D. Hager; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2022)

Multi-perspective region-based CNNs for vertebrae labeling in intraoperative long-length images. - Yixuan Huang; Craig K. Jones; Xinlei Zhang; Ashley Johnston; Selam Waktola; Nafi Aygun; Timothy Witham; Ali Bydon; Nicholas Theodore; Patrick A. Helm; Jeffrey H. Siewerdsen; Ali Uneri (Comput. Methods Programs Biomed., 2022)

Deformable MR-CT image registration using an unsupervised, dual-channel network for neurosurgical guidance. - Runze Han; Craig K. Jones; Junghoon Lee; Pengwei Wu; Prasad Vagdargi; Ali Uneri; Patrick A. Helm; Mark G. Luciano; William S. Anderson; Jeffrey H. Siewerdsen (Medical Image Anal., 2022)

Multi-modality registration of preoperative MR and intraoperative long-length tomosynthesis using GAN synthesis and 3D-2D registration. - Yixuan Huang; Xiaoxuan Zhang; Ashley Johnston; Craig K. Jones; Jeffrey H. Siewerdsen; Wojciech Zbijewski; Patrick A. Helm; Brendan Judy; Amanda Sacino; Ali Bydon; Timothy Witham; Ali Uneri (Image-Guided Procedures, 2023)

Real-time 3D neuroendoscopic guidance using SLAM: first clinical studies. - Prasad Vagdargi; Ali Uneri; Craig K. Jones; Xiaoxuan Zhang; Pengwei Wu; Runze Han; Alejandro Sisniega; Junghoon Lee; Patrick A. Helm; Mark G. Luciano; William S. Anderson; Gregory D. Hager; et al. (Image-Guided Procedures, 2023)

Active Learning in Brain Tumor Segmentation with Uncertainty Sampling, Annotation Redundancy Restriction, and Data Initialization. - Daniel D. Kim; Rajat S. Chandra; Jian Peng; Jing Wu; Xue Feng 001; Michael Atalay; Chetan Bettegowda; Craig K. Jones; Haris I. Sair; Wei-hua Liao; Chengzhang Zhu; Beiji Zou 001; et al. (CoRR, 2023)

Deep Labeling of fMRI Brain Networks. - Ammar Ahmed Pallikonda Latheef; Sejal Ghate; Zhipeng Hui; Alberto Santamaría-Pang; Ivan Tarapov; Haris I. Sair; Craig K. Jones (CoRR, 2023)

Automated Artifact Detection in Ultra-widefield Fundus Photography of Patients with Sickle Cell Disease. - Anqi Feng; Dimitri Johnson; Grace R. Reilly; Loka Thangamathesvaran; Ann Nampomba; Mathias Unberath; Adrienne W. Scott; Craig K. Jones (CoRR, 2023)

Applications of Sequential Learning for Medical Image Classification. - Sohaib Naim; Brian Caffo; Haris I. Sair; Craig K. Jones (CoRR, 2023)

Brain Tumor Segmentation for Multi-Modal MRI with Missing Information. - Xue Feng 001; Kanchan Ghimire; Daniel D. Kim; Rajat S. Chandra; Helen Zhang; Jian Peng; Binghong Han; Gaofeng Huang; Quan Chen; Sohil H. Patel; Chetan Bettagowda; Haris I. Sair; et al. (J. Imaging Inform. Medicine, 2023)

RTA-Former: Reverse Transformer Attention for Polyp Segmentation. - Zhikai Li; Murong Yi; Ali Uneri; Sihan Niu; Craig K. Jones (EMBC, 2024)

Enhancing vision-language models for medical imaging: bridging the 3D gap with innovative slice selection. - Yuli Wang; Peng jian; Yuwei Dai; Craig K. Jones; Haris I. Sair; Jinglai Shen; Nicolas Loizou; Jing Wu; Wen-Chi Hsu; Maliha Imami; Zhicheng Jiao; Paul Zhang; et al. (NeurIPS, 2024)

Evidential Uncertainty Quantification: A Variance-Based Perspective. - Ruxiao Duan; Brian Caffo; Harrison X. Bai; Haris I. Sair; Craig K. Jones (WACV, 2024)

Atlas-Based Labeling of Resting-State fMRI. - Hrishikesh Kambli; Alberto Santamaría-Pang; Ivan Tarapov; Elham Beheshtian; Licia P. Luna; Haris I. Sair; Craig K. Jones (Brain Connect., 2024)

Deformable registration of preoperative MR and intraoperative long-length tomosynthesis images for guidance of spine surgery via image synthesis. - Yixuan Huang; Xiaoxuan Zhang; Yicheng Hu; Ashley Johnston; Craig K. Jones; Wojciech Zbijewski; Jeffrey H. Siewerdsen; Patrick A. Helm; Timothy Witham; Ali Uneri (Comput. Medical Imaging Graph., 2024)

Emergent Language Symbolic Autoencoder (ELSA) with Weak Supervision to Model Hierarchical Brain Networks. - Ammar Ahmed Pallikonda Latheef; Alberto Santamaría-Pang; Craig K. Jones; Haris I. Sair (CoRR, 2024)

Self-Supervised Feature Detection and 3D Reconstruction for Real-Time Neuroendoscopic Guidance. - Prasad Vagdargi; Ali Uneri; Stephen Z. Liu; Craig K. Jones; Alejandro Sisniega; Junghoon Lee; Patrick A. Helm; Ryan P. Lee; Mark G. Luciano; Gregory D. Hager; Jeffrey H. Siewerdsen (IEEE Trans. Biomed. Eng., 2025)