RetrOryza: a database of the rice LTR-retrotransposons. - Cristian Chaparro; Romain Guyot; Andrea Zuccolo; Benoît Piégu; Olivier Panaud (Nucleic Acids Res., 2007)

A Pipeline for Functional and Visual Analytics of Microbial Genetic Networks. - Leandro Corrêa; Ronnie Alves; Fabiana Rodrigues de Góes; Cristian Chaparro; Lucinéia Thom (DyNaK, 2014)

FUNN-MG: A Metagenomic Systems Biology Computational Framework. - Leandro Corrêa; Ronnie Alves; Fabiana Rodrigues de Góes; Cristian Chaparro; Lucinéia Thom (BSB, 2014)

Towards an Ensemble Learning Strategy for Metagenomic Gene Prediction. - Fabiana Rodrigues de Góes; Ronnie Alves; Leandro Corrêa; Cristian Chaparro; Lucinéia Thom (BSB, 2014)

Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types. - Ingo Bulla; Benoît Aliaga; Virginia Lacal; Jan Bulla; Christoph Grunau; Cristian Chaparro (BMC Bioinform., 2018)