Self-consistent Knowledge-Based Approach to Protein Design. - Andrea Rossi 004; Cristian Micheletti; Flavio Seno; Amos Maritan (Mathematical Methods for Protein Structure Analysis and Design, 2003)

Learning Effective Amino-Acid Interactions. - Flavio Seno; Cristian Micheletti; Amos Maritan; Jayanth R. Banavar (Mathematical Methods for Protein Structure Analysis and Design, 2003)

PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains. - Tyanko Aleksiev; Raffaello Potestio; Francesco Pontiggia; Stefano Cozzini; Cristian Micheletti (Bioinform., 2009)

MISTRAL: a tool for energy-based multiple structural alignment of proteins. - Cristian Micheletti; Henri Orland (Bioinform., 2009)

Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: an application to OB-fold domains. - Andrea Zen; Cesira de Chiara; Annalisa Pastore; Cristian Micheletti (Bioinform., 2009)

ALADYN: a web server for aligning proteins by matching their large-scale motion. - Raffaello Potestio; Tyanko Aleksiev; Francesco Pontiggia; Stefano Cozzini; Cristian Micheletti (Nucleic Acids Res., 2010)

Knotted vs. Unknotted Proteins: Evidence of Knot-Promoting Loops. - Raffaello Potestio; Cristian Micheletti; Henri Orland (PLoS Comput. Biol., 2010)

Corresponding Functional Dynamics across the Hsp90 Chaperone Family: Insights from a Multiscale Analysis of MD Simulations. - Giulia Morra; Raffaello Potestio; Cristian Micheletti; Giorgio Colombo 001 (PLoS Comput. Biol., 2012)

The Role of Non-Native Interactions in the Folding of Knotted Proteins. - Tatjana Skrbic; Cristian Micheletti; Pietro Faccioli (PLoS Comput. Biol., 2012)

Folding Pathways of a Knotted Protein with a Realistic Atomistic Force Field. - Silvio a Beccara; Tatjana Skrbic; Roberto Covino; Cristian Micheletti; Pietro Faccioli (PLoS Comput. Biol., 2013)

Mechanical and Assembly Units of Viral Capsids Identified via Quasi-Rigid Domain Decomposition. - Guido Polles; Giuliana Indelicato; Raffaello Potestio; Paolo Cermelli; Reidun Twarock; Cristian Micheletti (PLoS Comput. Biol., 2013)

Colocalization of Coregulated Genes: A Steered Molecular Dynamics Study of Human Chromosome 19. - Marco Di Stefano; Angelo Rosa; Vincenzo Belcastro; Diego di Bernardo; Cristian Micheletti (PLoS Comput. Biol., 2013)

Unifying view of mechanical and functional hotspots across class A GPCRs. - Luca Ponzoni; Giulia Rossetti; Luca Maggi; Alejandro Giorgetti; Paolo Carloni; Cristian Micheletti (PLoS Comput. Biol., 2017)

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami. - Antonio Suma; Erik Poppleton; Michael Matthies; Petr Sulc; Flavio Romano; Ard A. Louis; Jonathan P. K. Doye; Cristian Micheletti; Lorenzo Rovigatti (J. Comput. Chem., 2019)

essHi-C: essential component analysis of Hi-C matrices. - Stefano Franzini; Marco Di Stefano; Cristian Micheletti (Bioinform., 2021)